Disruption of Ssp411 causes impaired sperm head formation and male sterility in mice

Background

We previously cloned the Ssp411 gene. We found that the Ssp411 protein is predominantly expressed in elongated spermatids in the rat testis in a stage-dependent manner. Although our findings strongly suggested that Ssp411 might play an important role in mammalian spermatogenesis, this hypothesis has not been studied.

Transcriptional suppression of nephrin in podocytes by macrophages: roles of inflammatory cytokines and involvement of the PI3K/Akt pathway

Expression of nephrin, a crucial component of the glomerular slit diaphragm, is downregulated in patients with proteinuric glomerular diseases. Using conditionally immortalized reporter podocytes, we found that bystander macrophages as well as macrophage-derived cytokines IL-1beta and TNF-alpha markedly suppressed activity of the nephrin gene promoter in podocytes. The cytokine-initiated repression was reversible, observed on both basal and inducible expression, independent of Wilms' tumor suppressor WT1, and caused in part via activation of the phosphatidylinositol-3-kinase/Akt pathway. These results indicated a novel mechanism by which activated macrophages participate in the induction of proteinuria in glomerular diseases.     

热带滨海植物红厚壳的抗逆生物学特性

为了解红厚壳(Calophyllum inophyllum)的抗逆特性,对西沙群岛自然生长的红厚壳叶片的形态解剖、生理生态、以及叶片和适生土壤的元素含量进行了研究。结果表明,红厚壳是阳生性植物,其上表皮厚,海绵组织发达且栅栏组织排列紧密,气孔排列松散且密度小(24.40 mm~(-2)),有利于叶片保水抵御干旱。叶片的叶绿素a、b含量低(分别为0.87和0.43 mg g~(-1)),表明红厚壳具适应强光环境的能力。叶片的MDA含量低(13.46 nmol g~(-1)),PRO含量高(127.89μg g~(-1)),SOD活性高(149.42 U g~(-1)),总抗氧化能力高(388.60 U g~(-1)),显示红厚壳能通过提高自身的抗氧化能力抵御膜脂过氧化伤害。红厚壳自然生长的珊瑚岛土壤较为贫瘠、营养元素含量低,但红厚壳植株体内具有较高的营养元素含量,表明红厚壳营养元素利用率高,对于贫瘠土壤具有很好的适应能力。因此,红厚壳具有较高的抗氧化胁迫能力和耐受干旱的能力,适宜生长在热带珊瑚岛等土壤贫瘠的生境,可以作为热带珊瑚岛防风固沙和植被恢复的工具种。     

Identification and Validation of a Prognostic Model Based on Three MVI-Related Genes in Hepatocellular Carcinoma

MVI has significant clinical value for treatment selection and prognosis evaluation in hepatocellular carcinoma (HCC). We aimed to construct a model based on MVI-Related Genes (MVIRGs) for risk assessment and prognosis prediction in patients with HCC. This study utilized various statistical analysis methods for prognostic model construction and validation in the Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) cohorts, respectively. In addition, immunohistochemistry and qRT-PCR were used to analyze and identify the value of the model in our cohort. After the analyses, 153 differentially expressed MVIRGs were identified, and three key genes were selected to construct a prognostic model. The high-risk group showed significantly lower overall survival (OS), and this trend was observed in all subgroups: different age groups, genders, stages, and grades. Risk score was a risk factor independent of age, gender, stage, and grade. Moreover, the ICGC cohort validated the prognostic value of the model corresponding to the TCGA. In our cohort, qRT-PCR and immunohistochemistry showed that all three genes had higher expression levels in HCC samples than in normal controls. High expression levels of genes and high-risk scores showed significantly lower recurrence-free survival (RFS) and OS, especially in MVI-positive HCC samples. Therefore, the prognostic model constructed by three MVIRGs can reliably predict the RFS and OS of patients with HCC and is valuable for guiding clinical treatment selection and prognostic assessment of HCC.     

西双版纳聚果榕榕果小蜂种间联结性研究

应用方差比率法、2× 2列联表的 χ2 检验、联结系数、点相关系数、共同出现百分率、Pearson相关系数和秩相关系数等多指数比较的方法研究了西双版纳聚果榕榕果小蜂的种间联结性。研究表明 ,西双版纳聚果榕榕果小蜂种间总体联结性表现为极显著。 2× 2列联表的 χ2检验不能反映所研究昆虫种间联结性的真实情况。 6个聚果榕榕果小蜂种间共同出现率普遍较高。小蜂种间的联结程度多属极显著 (对于联结系数 15个种对中有 10个 ,对于秩相关系数15个种对中有 12个 )。传粉者Ceratosolenfusciceps同其它小蜂间的联结显著性最高 ,其中与Platyneuratestacea和P .mayri呈极显著负联结 ,与P .agraensis呈极显著正联结 ,但与Apoc rypta属 2小蜂的关系尚不十分明晰。Platyneura属 3种小蜂彼此之间呈极显著或显著的负联结关系 ,而Apocrypta属内 2个种之间呈极显著正联结。文章对该 6种榕果小蜂种间连接关系形成的原因及进化生态学后果作了较详尽的讨论。     

菌紫质光生物分子器件及其超快过程

菌紫质是嗜盐菌紫膜中的一种光能转换蛋白.它具有光致色变和光驱动质子泵功能,其原初光异构化过程极其迅速,可在430fs内完成.由于菌紫质具有一系列独特的光电和光学特性,如对光强的微分响应,高的空间分辨率,高的光灵敏度,高循环次数等,使得它在光电探测,仿视觉系统,人工神经网络,非线性光学及光学信息记录和处理方面有很多重要应用.利用超短脉冲激光技术,高时间分辨光谱学技术及高速取样探测技术,对菌紫质的光循环,原初光异构化,激发态动力学,质子泵机制等方面的研究已取得了许多有意义的结果.     

Local habitat condition rather than geographic distance determines the genetic structure of Tamarix chinensis populations in Yellow River Delta,China

Tree Genetics &; Genomes - To breed a new variety of coffee (Coffea arabica) requires approximately 25&;nbsp;years due to the long generation time (5–6&;nbsp;years) of this perennial...     

基于微滴式数字PCR检测肠癌病人游离环状DNA KRAS突变的新方法

基于微滴式数字聚合酶链式反应(Droplet digital polymerase chain reaction,dd PCR)设计一种检测肠癌游离循环DNA(Circulating cell free DNA,cf DNA)中KRAS(V-Ki-ras2 Kirsten ratsarcoma viral oncogene homolog)基因突变的新方法并评估其灵敏度和准确性。根据肠癌病人KRAS基因的突变类型设计并合成,采用dd PCR扩增并评估其灵敏度和准确性;根据AMRS-PCR引物设计原理设计KRAS基因的实时定量PCR扩增引物并评估其准确性,进而比较dd PCR和q PCR二者之间的优缺点;最后针对52例肠癌病人的cf DNA采用dd PCR进行检测,研究dd PCR在cf DNA KRAS基因突变检测的应用。成功使用dd PCR和q PCR两种方法对KRAS野生型及7种突变型建立检测方法,使用质粒标准品及实际样品验证该两种方法可行并对其假阳性率、线性范围及检测下限等性能进行了评价,最后成功对52例临床患者和20例正常人的血浆cf DNA样本进行检测,临床灵敏度为97.64%,临床特异性为81.43%。dd PCR的检测性能优于q PCR,LOD达到个位数DNA拷贝,最低可确认突变浓度达到0.01%–0.04%。样本提取效率在方法学建立中也十分重要,直接影响到灵敏度和Cut Off值的判定。临床患者检测结果显示其KRAS突变率接近报道水平。     

ITMSQ: A software tool for N‐ and C‐terminal fragment ion pairs based isobaric tandem mass spectrometry quantification

Tandem MS (MS2) quantification using the series of N‐ and C‐terminal fragment ion pairs generated from isobaric‐labelled peptides was recently considered an accurate strategy in quantitative proteomics. However, the presence of multiplexed terminal fragment ion in MS2 spectra may reduce the efficiency of peptide identification, resulting in lower identification scores or even incorrect assignments. To address this issue, we developed a quantitative software tool, denoted isobaric tandem MS quantification (ITMSQ), to improve N‐ and C‐terminal fragment ion pairs based isobaric MS2 quantification. A spectrum splitting module was designed to separate the MS2 spectra from different samples, increasing the accuracy of both identification and quantification. ITMSQ offers a convenient interface through which parameters can be changed along with the labelling method, and the result files and all of the intermediate files can be exported. We performed an analysis of in vivo terminal amino acid labelling labelled HeLa samples and found that the numbers of quantified proteins and peptides increased by 13.64 and 27.52% after spectrum splitting, respectively. In conclusion, ITMSQ provides an accurate and reliable quantitative solutionfor N‐ and C‐terminal fragment ion pairs based isobaric MS2 quantitative methods.