PNAS-4 expression and its relationship to p53 in colorectal cancer

PNAS-4 is a novel pro-apoptotic protein activated during the early response to DNA damage; however, the molecular mechanisms and pathways regulating PNAS-4 expression in tumors are not well understood. We hypothesized that PNAS-4 is a p53 down-stream target gene and designed this study. We searched online for putative p53-binding sites in the entire PNAS-4 gene and did not find any corresponding information. In HCT116 colon cancer cells, after being transfected with small interfering RNA to silence p53, the expressions of PNAS-4 and other known p53 target gene (Apaf1, Bax, Fas and Dr5) were determined by real-time PCR. We found that PNAS-4 was up-regulated while Apaf1, Bax, Fas and Dr5 were down-regulated. We then examined the expression of PNAS-4 and p53 mutation in colorectal cancer patients. PNAS-4 expressed both in colorectal cancers and normal tissues, but compared with paired control, PNAS-4 was up-regulated in cancers (P = 0.018). PNAS-4 overexpression ratios were correlated to the p53 mutant status (P = 0.001). The mean PNAS-4 expression levels of p53 mutant homozygote group and heterozygote group were higher than that of p53 wild type group (P = 0.013). The expression ratios of PNAS-4 (every sample in relative to its paired normal mucosa) were different between negative lymph node metastasis (66% up-regulated, 34% down-regulated) and positive metastasis (42% up-regulated, 58% down-regulated). Taken together, these findings suggested that PNAS-4 was not a p53 target, but overexpression of PNAS-4 was correlated to p53 inactivity in colorectal cancer.     

HIV-1 glycoprotein 41 ectodomain induces activation of the CD74 protein-mediated extracellular signal-regulated kinase/mitogen-activated protein kinase pathway to enhance viral infection

Besides mediating the viral entry process, the human immunodeficiency virus (HIV-1) envelope protein gp41 can bind to many host cell components and regulate cell functions. Using a yeast two-hybrid system, we screened a human bone marrow cDNA library and identified a novel gp41-binding protein, CD74 (the MHC class II-associated invariant chain). Here, we report possible biological effects mediated by interaction between gp41 and CD74. We found that HIV-1 gp41 could bind directly to host CD74 in HIV-1-infected cells, and the peptide 6358 derived from gp41 loop region (aa 597-611) could effectively block the gp41-CD74 interaction. As a result of this binding, recombinant soluble gp41 and gp41 peptide 6358 activated the CD74-mediated ERK/MAPK pathway and significantly enhanced HIV-1 infection in vitro. Conversely, the enhancing effect could be suppressed by the recombinant CD74 extracellular domain. These results reveal a novel mechanism underlying gp41 mediation of HIV-1 infection and replication.     

分批发酵生产谷氨酰胺转氨酶的温度控制策略

微生物谷氨酰胺转氨酶 (Ｍｉｃｒｏｂｉａｌｔｒａｎｓｇｌｕｔａｍｉｎａｓｅ ,简称ＭＴＧ ,ＥＣ2 3 2 13)由于能催化许多食品中蛋白质的交联反应 ,改善各种蛋白质的功能性质 ,在食品工业具有广泛的应用潜力[1] ,因而引起了人们的极大兴趣。谷氨酰胺转氨酶的生产通常采用从豚鼠肝脏或组织中提取 ,由于豚鼠肝脏或组织来源稀少 ,谷氨酰胺转胺酶的分离纯化过程复杂 ,因而价格昂贵。 2 0世纪 80年代末 ,Ａｎｄｏ和Ｍｏｔｏｋｉ等人[2 ,3 ] 首先报道了利用微生物发酵法生产谷氨酰胺转胺酶的结果 ;近年来 ,Ｇｅｒｂｅｒ等人[4 ] 对其下游技术进…     

Effects of Fragmentation of Evergreen Broad-leaved Forests on Genetic Diversity of Ardisia Crenata var. Bicolor (Myrsinaceae)

Due to the long generation times and high densities, dominant tree species usually did not respond consistently with theoretical predictions to the recent fragmentation. Genetic structures of shrubs and herbs, especially those with low densities, may be more sensitive to forest fragmentation. We studied the genetic structure of a self-compatible subshrub, Ardisia crenata var. bicolor (Myrsinaceae) in a recently fragmented landscape. Ten RAPD primers used for analysis generated a total of 76 bands. We found that A. c. var. bicolor had relatively low species-level (P₉₅ = 63.2%; H = 0.106; Shannon diversity index (SI) = 0.246) and within-population diversity (P₉₅ = 5.3−46.1%; H = 0.026−0.175; SI = 0.032−0.253), and significant population differentiation (G_ST = 0.445). Significantly positive relationships were found between measures of diversity (P₉₅, H and SI) and the log of estimated population size. No significant relationship was observed between Nei's genetic distance and spatial distance of pairwise populations, indicating no isolation-by-distance. Given most species of forests are shrubs and herbs with short generation times, our observation indicated that distinct genetic consequences of recent fragmentation may be expected for quite a number of plant species.     

HOPS复合体蛋白在细胞自噬过程中的功能研究

自噬(autophagy)是一种溶酶体依赖性的细胞内降解途径,其主要功能是将生物大分子(蛋白质、多糖等)或细胞器(线粒体等)回收至溶酶体中并将其降解为单糖、氨基酸等小分子以重复利用。发现HOPS复合体中的两个基因vps39和vps41的缺失会导致酵母内GFP-ATG8大量积累。进一步研究表明,积累的原因是GFP-ATG8与液泡不能发生融合。而在HOPS复合体中的另外两个基因vps16和vps18缺失的情况下,自噬融合没有受到影响;在vps16和vps18双敲除的菌株中,自噬融合同样没有受到影响。该实验结果为理解HOPS复合体的功能和自噬体与液泡融合的过程提供了新的线索。     

Biodegradation of poly(ε-caprolactone) (PCL) by a new Penicillium oxalicum strain DSYD05-1

In this study, fungi isolated from soil were screened for their ability to form clear zones on agar plates with emulsified poly(ε-caprolactone) (PCL). The most active strain, designated as DSYD05, was identified as Penicillium oxalicum on the basis of morphological characteristics and phylogenetic analysis. Mutant DSYD05-1, obtained by ultraviolet-light mutagenesis from strain DSYD05, was more effective in PCL degradation. In liquid cultures of the mutant strain with PCL emulsion, DSYD05-1 showed the highest PCL-degrading activity after 4?days of cultivation. The products of PCL degradation were analysed by mass spectrometry; the results indicated that 6-hydroxyhexanoic acid was produced and assimilated during cultivation. The degradation of PCL film by DSYD05-1 was observed by scanning electron microscopy, and was indicative of a three-stage degradation process. The degradation of amorphous parts of the film preceded that of the crystalline center and then the peripheral crystalline regions. In addition, DSYD05-1 showed a wide range of substrate specificity, with capability to degrade PCL, poly(β-hydroxybutyrate), and poly(butylene succinate), but not poly(lactic acid), indicating that the strain could have potential for application in the treatment or recycling of bio-plastic wastes.     

反刍兽月形单胞菌β-木糖苷酶基因在毕赤酵母中的高效表达及酶学性质

β-木糖苷酶(β-xylosidase,酶编号EC 3.2.1.37)是木聚糖降解酶系中的重要组成部分。本研究以毕赤酵母Pichia pastoris GS115为宿主菌尝试表达反刍兽月形单胞菌Selenomonas ruminantium中的β-木糖苷酶基因Sxa。根据毕赤酵母对密码子的偏爱性、mRNA二级结构、GC含量和稀有密码子,对Sxa基因进行优化;通过基因合成技术获得了全长基因mSxa并构建重组酵母表达载体pPIC9K-mSxa;以BglⅡ酶切重组载体pPIC9K-mSxa,电击转化将m Sxa基因导入毕赤酵母GS115中,获得的转化子经过表型和遗传霉素G418抗性筛选、PCR鉴定,得到表达β-木糖苷酶基因的工程菌GS115-pPIC9K-mSxa;通过活性测定获得高效表达β-木糖苷酶的重组酵母,并对重组β-木糖苷酶的酶学性质进行了初步研究。结果表明,重组β-木糖苷酶的分子量约为66 kDa。在发酵罐水平表达的酶活性达到了287.61 IU/mL。对酶学性质研究显示,该酶在温度为40-60℃,pH为5.0-7.0时较稳定,其最适反应温度和pH分别为55℃和6.0,专一性地作用于β-木糖苷键。Mn~(2+)和Ca~(2+)对该酶具有激活作用,而Fe~(3+)、Cu~(2+)、Co~(2+)、Mg~(2+)、EDTA及SDS抑制其酶活性。本研究首次将反刍兽月形单胞菌的β-木糖苷酶基因转化到毕赤酵母中获得表达,并具有较高活性,为进一步工业化应用奠定了基础。