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61.
Molecular dynamics simulations of native and substrate-bound lysozyme. A study of the average structures and atomic fluctuations 总被引:6,自引:0,他引:6
C B Post B R Brooks M Karplus C M Dobson P J Artymiuk J C Cheetham D C Phillips 《Journal of molecular biology》1986,190(3):455-479
Molecular dynamics simulations of hen egg-white lysozyme in the free and substrate-bound states are reported and the nature of the average structures and atomic fluctuations are analyzed. Crystallographic water molecules of structural importance, as determined by hydrogen-bonding, were included in the simulations. Comparisons are made between the dynamics and the X-ray results for the atomic positions, the main-chain and side-chain dihedral angles, and the hydrogen-bonding geometry. Improvements over earlier simulations in the potential energy function and methodology resulted in stable trajectories with the C alpha co-ordinates within 1.5 A of the starting X-ray structure. Structural features analyzed in the simulations agreed well with the X-ray results except for some surface residues. The Asx chi 2 dihedral distribution and the geometry of hydrogen bonding at reverse turns show differences; possible causes are discussed. The relation between the magnitudes and time-scales of the residue fluctuations and secondary structural features, such as helices beta-sheets and coiled loops, is examined. Significant differences in the residue mobilities between the simulations of the free and substrate-bound states were found in a region of the enzyme that is in direct contact with the substrate and in a region that is distant from the active-site cleft. The dynamic behavior of the structural water molecules is analyzed by examining the correlation between the fluctuations of the water oxygens and the lysozyme heavy-atoms to which they are hydrogen-bonded. 相似文献
62.
Antisense Therapy for a Common Corneal Dystrophy Ameliorates TCF4 Repeat Expansion-Mediated Toxicity
Christina Zarouchlioti Beatriz Sanchez-Pintado Nathaniel J. Hafford Tear Pontus Klein Petra Liskova Kalyan Dulla Ma’ayan Semo Anthony A. Vugler Kirithika Muthusamy Lubica Dudakova Hannah J. Levis Pavlina Skalicka Pirro Hysi Michael E. Cheetham Stephen J. Tuft Peter Adamson Alison J. Hardcastle Alice E. Davidson 《American journal of human genetics》2018,102(4):528-539
63.
Acid α-glucosidase (GAA) is a lysosomal enzyme that hydrolyzes glycogen to glucose. Deficiency of GAA causes Pompe disease. Mammalian GAA is synthesized as a precursor of ~ 110,000 Da that is N-glycosylated and targeted to the lysosome via the M6P receptors. In the lysosome, human GAA is sequentially processed by proteases to polypeptides of 76-, 19.4-, and 3.9-kDa that remain associated. Further cleavage between R200 and A204 inefficiently converts the 76-kDa polypeptide to the mature 70-kDa form with an additional 10.4-kDa polypeptide. GAA maturation increases its affinity for glycogen by 7-10 fold. In contrast to human GAA, processing of bovine and hamster GAA to the 70-kDa form is more rapid. A comparison of sequences surrounding the cleavage site revealed human GAA contains histidine at 201 while other species contain hydrophobic amino acids at position 201 in the otherwise conserved sequence. Recombinant human GAA (rhGAA) containing the H201L substitution was expressed in 293 T cells by transfection. Pulse chase experiments in 293 T cells expressing rhGAA with or without the H201L substitution revealed rapid processing of rhGAAH201L but not rhGAAWT to the 70-kDa form. Similarly, when GAA precursor was endocytosed by human Pompe fibroblasts rhGAAH201L but not rhGAAWT was rapidly converted to the 70-kDa mature GAA. These studies indicate that the amino acid at position 201 influences the rate of conversion of 76-kDa GAA to 70-kDa GAA. The GAA sequence rather than the lysosomal protease environment explains the predominance of the 76-kDa form in human tissues. 相似文献
64.
Daniel Green Craig Cheetham Chris Reed Lawrie Dembo Gerry O'Driscoll 《Journal of applied physiology》2002,93(1):361-368
We describe a novel software system that utilizes automated algorithms to perform edge detection and wall tracking of high-resolution B-mode arterial ultrasound images, combined with synchronized Doppler waveform envelope analysis, to calculate conduit arterial blood flow (BF) across the cardiac cycle. Furthermore, we describe changes in brachial arterial BF to the resting forearm during incremental cycle ergometry in eight subjects. During exercise, peak BF during the cardiac cycle increased at each workload (P < 0.001), because of increased velocity in the presence of unaltered cross-sectional area. In contrast, mean BF calculated across each cardiac cycle decreased at lower workloads before increasing at 100 and 160 W (P < 0.001). Differences in the pattern of peak and mean cardiac cycle flows were due to the influence of retrograde diastolic flow, which had a larger impact on mean flows at lower workloads. In conclusion, BF can be measured with high temporal resolution across the cardiac cycle in humans. Resting brachial arterial flow, including retrograde flow, increases during lower limb exercise. 相似文献
65.
The molecular mechanisms by which plants sense their micronutrient status, and adapt to their environment in order to ensure a sufficient micronutrient supply, are poorly understood. Zinc is an essential micronutrient for all living organisms. when facing a shortage in zinc supply, plants adapt by enhancing the zinc uptake capacity. The molecular regulators controlling this adaptation were recently identified. in this mini-review, we highlight recent progress in understanding the adaptation to zinc deficiency in plants and discuss the future challenges to fully unravel its molecular basis.Key words: adaptation, zinc deficiency, biofortification, molecular regulators, plant nutritionIn an increasingly populated world, agricultural production is an essential element of social development. Agriculture is the primary source of all nutrients required for human life, and nutrient sufficiency is the basis for good health and welfare of the human population.1 Soils with zinc deficiency are widespread in the world, affecting large areas of cultivated soils in India, Turkey, China, Brazil and Australia,2,3 making zinc the most common crop micronutrient deficiency.4 In addition, risk of inadequate zinc diet and zinc malnutrition are estimated to affect one-third of the global human population, i.e., around two billion people.5 Most affected are people living in developing countries, where diets are rich in cereal-based foods. Cereal grains are rich in phytate, which is a potent anti-nutrient, limiting micronutrient bioavailability.6 Zinc deficiency in crop production can be easily ameliorated through zinc fertilization, making agronomic biofortification an important strategy,3 however in the poorer regions, the required infrastructure to provide a reliable supply of zinc fertilizers of sufficient quality, is often not available. In those situations, biofortified crops, in which the zinc status of crops is genetically improved by selective breeding or via biotechnology, offer a rural-based intervention that will more likely reach the population.7 Different traits can be targeted to developing such improved crops, such as plant zinc deficiency tolerance, zinc use efficiency and the accumulation of zinc in edible parts. However, insufficient knowledge on the molecular mechanisms and the regulation of the zinc homeostasis network in plants is a serious bottleneck when pursuing zinc biofortification. 相似文献
66.
67.
Many invertebrate animals belonging to diverse phyla grow as regularly branching structures with the general appearance of miniature trees. If it is assumed that regularity of branching implies regularity in growth, models can be mathematically derived to depict growth of such a structure as a set of changing morphologic properties. Modes of growth, branching properties, and growth models can be expected to differ markedly from one major taxonomic group to another. Nevertheless, these properties can furnish a useful basis for comparing adaptive morphologies and underlying mechanical designs not only among arborescent animals, but with arborescent plants as well.Branching structures of some cheilostome bryozoans with rigidly erect, arborescent growth habits are inferred to result from continuous growth at steadily increasing numbers of growing tips through a process of repeated bifurcation and lengthening. In a model of continuous growth, the pattern by which the number of growing tips increases can be shown to be a generalized mathematical series, of which the Fibonacci series and a geometric series are two special cases. The quantities which determine the series can be calculated from measurable properties of the branching structure: lengths of paired branch portions ending in growing tips (relative growth ratio), lengths of paired branch portions between bifurcations (mean link length and link-length ratio), and numbers of branch portions belonging to different orders (branching ratio). Data for eight species of cheilostome bryozoans indicate, with high levels of confidence, that measurable branching properties and the models of relative growth inferred from them are species-specific. This specificity and a tendency to adhere to characteristic values of branching properties during growth are apparently direct expressions of internal control in these bryozoans. 相似文献
68.
J. I. Evans S. A. Lewis I. A. M. Gibb Mary Cheetham 《BMJ (Clinical research ed.)》1968,4(5626):291-293
To determine the effect of barbiturates on sleep two subjects, after a control period, received 200 mg. of sodium amylobarbitone for 26 nights. All night sleep records taken during this period showed that the barbiturate shortened the delay to sleep, increased the total sleep period, lengthened the delay to rapid eye movement (R.E.M.) sleep, and depressed R.E.M. sleep. After five nights R.E.M. sleep returned to baseline values —that is, showed tolerance. On stopping the drug withdrawal phenomena were seen, even to this small dose of the drug.In a second experiment a subject dependent on 600 mg. of Tuinal was found to have low normal R.E.M. sleep while on drugs. On withdrawal, delay to sleep increased and total sleep time fell. R.E.M. sleep was doubled and the delay to R.E.M. became abnormally short.These findings suggest that hypnotics allow sleep to be “borrowed,” and that patients should be supported while they are being withdrawn. 相似文献
69.
Henderson AJ Deering D Grabowski JF Hadden M Jiang X Khmelnitsky Y Luche M Surman MD Cheetham S Vickers S Viggers J Guzzo PR 《Bioorganic & medicinal chemistry letters》2010,20(23):7024-7028
A new series of tetrahydrocarbolines with potent MCH-1 antagonist activity were synthesized, using a conformationally constrained design approach towards optimizing pharmacokinetic properties. Two compounds from this series were progressed to a 5-day diet-induced obesity mouse screening model to evaluate their potential as weight loss agents. Both compounds produced a highly significant reduction in weight, which was attributed to their improved pharmacokinetic profile. 相似文献
70.
Suzanne Arends Marianne Hofman Yvo PT Kamsma Eveline van der Veer Pieternella M Houtman Cees GM Kallenberg Anneke Spoorenberg Elisabeth Brouwer 《Arthritis research & therapy》2013,15(4):R99