Complex phylogenetic distribution of a non-canonical genetic code in green algae

Background  

A non-canonical nuclear genetic code, in which TAG and TAA have been reassigned from stop codons to glutamine, has evolved independently in several eukaryotic lineages, including the ulvophycean green algal orders Dasycladales and Cladophorales. To study the phylogenetic distribution of the standard and non-canonical genetic codes, we generated sequence data of a representative set of ulvophycean green algae and used a robust green algal phylogeny to evaluate different evolutionary scenarios that may account for the origin of the non-canonical code.     

Cyclic AMP increases the Adhesion of Fibroblasts to Substratum

THE interaction between the cell surface and the substratum is very important in determining several characteristics of cells growing in tissue culture. Transformed cells are less adherent to the substratum than untransformed cells¹ and this reduced interaction with the substratum may be responsible for abnormal properties such as the loss of contact or density dependent inhibition of growth² and the ability to form colonies in agar and to grow in suspension culture.     

Optical studies of a conformational change in DNA before melting

The circular dichroism of double-stranded DNA is temperature dependent prior to its melting. As the temperature is increased the spectrum becomes more nonconservative. This is certainly due to a conformational change within the framework of the double helix. To ascertain the nature of the conformational change, a series of synthetic and natural DNA's from a variety of sources was investigated. The same qualitative changes were seen for all the DNA samples, independent of base composition. However, there were definite quantitative differences, with poly [d(A-T)] manifesting the largest effect. Oligomers of the form [d(A-T)]_n with n = 10 to 21 behaved in a manner similar to the polymer. There is no observed chain-length dependence. The breadth of the pre-melt transition indicates a low ΔH (less than 5 kcal./mole); the lack of dependence on chain length indicates that the co-operative unit is smaller than eight base pairs.     

Immune surveillance and neoplasia—II A two-stage mathematical model

In a previous paper (DeLisi and Rescigno, 1977) a model for the interaction of tumor cells and killer lymphocytes was presented. Although that model was highly simplified, the qualitative behavior was in accord with intuitive expectations and a wide range of data. It could not however account forde novo tumor development. In this paper a slightly more realistic model is presented by introducing a delay in the formation of killer lymphocytes. This is done by requiring two stages in the production of a killer. We show that introduction of this second stage allows tumor development from even a single cell, thus removing an important limitation of two variable systems.     

Properties of reaction centers of Rhodopseudomonas sphaeroides in dried gelatin films.: Linear dichroism and low temperature spectra

Methods of preparing dried gelatin films containing purified reaction centers of Rhodopseudomonas sphaeroides are described. The spectral properties of reaction centers in solution are essentially maintained in dried gelatin films. These films are uniform and have excellent optical properties, showing little particulate scattering at temperatures down to about 4K. Film contraction on cooling to 90K is less than 1% in linear dimension. Linear dichroism spectra are reported for films at room and low temperature. Reaction centers show a moderate amount of linear dichroism in unstretched gelatin films; the magnitude of the linear dichroism becomes much greater when the films are stretched. In stretched films, linear dichroic ratios ($\text{A}{}_{\mathrm{\parallel }}\text{A}{}_{\mathrm{\perp }}$; absorbance measured with electric vector parallel and perpendicular to stretching direction) between 1.7 and 2.2 were obtained for the 860 nm absorption band of the bacteriochlorophyll component that undergoes primary photooxidation. The relative polarizations of light-induced absorption changes of reaction centers in stretched films are similar to those reported by Vermeglio and Clayton ((1976) Biochim. Biophys. Acta 449, 500–515) and support their hypothesis that absorbance decreases, maximal near 860 and 810 nm, and an increase near 790 nm are associated with the respective disappearance and appearance of discrete bands characteristic of the reduced and oxidized bacteriochlorophyll dimer. This interpretation is also supported by the polarization of the absolute absorption spectrum near 810 and 860 nm. An absorption band near 540 nm, ascribed to the Q_x transitions of two molecules of bacteriopheophytin in the reaction center, is split at low temperatures into two bands having similar polarizations. This splitting is probably not due to exciton coupling of the two molecules, since excition theory predicts different polarizations.