Chromatin in diapause of the silkworm <Emphasis Type="Italic">Bombyx mori</Emphasis> L.: Thermal parthenogenesis and normal development

By using hematoxylin staining, peculiarities of chromatin of diapausing silkworm embryos were studied in normal and parthenogenetic development. A direct correlation was revealed between the number of interphase chromatin grains and the number of chromosomes in the nucleus; polyploidization of cells in embryo was studied at the stage of diapause. The polyploidization in parthenogenesis is not restricted to endomitotic chromosome set doubling, as it includes 6n-nuclei. To explain the more diverse spectrum of polyploid cells in parthenogenesis (as compared with the norm), it is necessary to take into account fusion of cleavage nuclei, which is realized by the cytoplasmic mechanism of karyogamy in the absence of fertilization. On squash preparations, for the first time, we identified primordial germ cells of the diapausing embryo, which are characterized by less compact chromatin, especially in the zygotic variant of development; by larger nuclei and cytoplasm; and by an irregular number and size of nucleoli. Estimation of ploidy of the primary germ cells in parthenogenesis by counting “loose” chromatin grains in diapause is possible and indicates polyploidization in the primordial germ cells. This explains an inevitable admixture of tetraploid eggs in the grain of diploid parthenoclones and its absence in normal development. The cytological method used has revealed a spiral arrangement of chromatin grains on the internal nuclear surface at different ploidy levels.     

Recovery rates of chlorophyll-fluorescence parameters in desiccation-tolerant plants: fitted logistic curves as a versatile and robust source of comparative data

Desiccation-tolerant plants vary greatly in the rate of recovery of chlorophyll-fluorescence parameters on re-wetting. This paper seeks general curves that will adequately describe the course of recovery, and quantify the variations in rate within and between species. Recovery of F _v /F _m is closely fitted in many species by a logistic curve, starting from zero, on a logarithmic time-scale (seconds to days). Such curves have three parameters, an asymptote at maximum F _v /F _m, a half-recovery time (T _0.5), and a slope constant (S). If F _v /F _m in dry material differs substantially from zero, four-parameter logistic curves can give a better fit. In either case, T _0.5 and S show wide ecologically-significant variation. Some species show anomalously high values of F _v /F _m in the early minutes of recovery, alongside low absolute values of F _m; these invite further investigation. Logistic curves give good fits to the recovery in light of Φ _PSII, q _P, and photosynthetic CO₂ fixation. The results provide the means to quantify ‘high-inertia’ versus ‘low-inertia’ strategies of desiccation tolerance, and to explore the factors influencing recovery time and rate, and the reasons for some discrepancies from the common course of recovery. There is substantial overlap in all parameters between the bryophytes and pteridophytes studied.     

Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders

Background  

Parallel evolution can occur when common environmental factors exert similar selective forces on morphological variation in populations in different geographic localities. Competition can also generate morphological shifts, and if competing species co-occur in multiple geographic regions, then repeated instances of competitively-driven morphological divergence (character displacement) can occur. Despite the importance of character displacement for inferring the role of selection in morphological evolution however, replicated instances of sympatric morphological divergence are understudied.     

The development of policy approaches for reducing nitrogen pollution to coastal waters of the USA

Two-thirds of the coastal rivers and bays in the United States are degraded from nutrient pollution, and nitrogen inputs these waters continue to increase. The nitrogen comes from a variety of sources, including runoff from agricultural fields, concentrated animal feeding operations, atmospheric deposition from fossil fuel combustion, and sewage and septic wastes. Technical solutions for nitrogen pollution exist at reasonable cost. That most of these solutions have not yet been implemented to any significant extent across the United States suggests that new policy approaches are necessary. The best solution may involve a combination of voluntary and mandatory approaches, applying different approaches to different sources of nitrogen pollution. A watershed-based approach that relies heavily on voluntary mechanisms (such as crop-yield insurance to reduce over-fertilization) is likely to be the most effective for some sources of nitrogen (such as runoff from agricultural fields), while a uniform national regulatory approach may be better for others (such as NO_x emissions from fossil fuel combustion). Implementation of management strategies should be carefully coupled to monitoring programs to assess the effectiveness of these strategies. While both nitrogen and phosphorus are important to control, the focus should be on nitrogen management, in part because nitrogen is more generally the causal agent of coastal eutrophication. Also, while nitrogen-control practices tend to also reduce phosphorus pollution, phosphorus-control practices often have little effect on nitrogen. Although current scientific and technical knowledge is sufficient to begin to make substantial progress toward solving coastal nitrogen pollution, progress will be made more quickly and more cost effectively with increased investment in appropriate scientific research.     

Evaluation of four methods for computing parameter sensitivities in dynamic system models

Computation of state sensitivities with respect to parameters can be a difficult and costly numerical problem when the number of states and parameters is large, or when sensitivities must be computed repeatedly, as with many optimization algorithms. Four methods are evaluated in terms of solution accuracy, and computer-time and storage requirements: direct numerical integration of the complete sensitivity-system differential equations, a reduced-order method based on the controllable states of the sensitivity system, a numerical-quadratures technique applied directly to the analytic solution of the original system, and an approach based on the solution of the transition matrix. Three linear system models, with four different types of inputs, were used as test cases, the largest having 6 states and 12 parameters. The reduced-order method was the most time-efficient in a majority of cases, but it was prone to numerical instability problems in certain situations which may be encountered in applications. It also had the largest storage requirements. For the highest-order system, only direct numerical integration and the transition-matrix method produced sufficiently accurate results for most applications, because of matrix-inversion problems with the other methods. For impulse inputs, the transition-matrix and the numerical-quadratures methods overall were the most computationally efficient, but the transition-matrix approach required much more memory storage.     

Host selection as a downstream strategy: polyelectrolyte precipitation of beta-glucuronidase from plant extracts.

Host selection can be a strategy to simplify downstream processing for protein recovery. Advancing capabilities for using plants as hosts offers new host opportunities that have received only limited attention from a downstream processing perspective. Here, we investigated the potential of using a polycationic precipitating agent (polyethylenimine; PEI) to precipitate an acidic model protein (beta-glucuronidase; GUS) from aqueous plant extracts. To assess the potential of host selection to enhance the ease of recovery, the same procedure was applied to oilseed extracts of canola, corn (germ), and soy. For comparison, PEI precipitation of GUS was also evaluated from a crude bacterial fermentation broth. Two versions of the target protein were investigated--the wild-type enzyme (WTGUS) and a genetically engineered version containing 10 additional aspartates on each of the enzyme's four homologous subunits (GUSD10). It was found that canola was the most compatible expression host for use with this purification technique. GUS was completely precipitated from canola with the lowest dosage of PEI (30 mg PEI/g total protein), and over 80% of the initial WTGUS activity was recovered with 18-fold purification. Precipitation from soy gave yields over 90% for WTGUS but only 1.3-fold enrichment. Corn, although requiring the most PEI relative to total protein to precipitate (210 mg PEI/g total protein for 100% precipitation), gave intermediate results, with 81% recovery of WTGUS activity and a purification factor of 2.6. The addition of aspartate residues to the target protein did not enhance the selectivity of PEI precipitation in any of the systems tested. In fact, the additional charge reduced the ability to recover GUSD10 from the precipitate, resulting in lower yields and enrichment ratios compared to WTGUS. Compared to the bacterial host, plant systems provided lower polymer dosage requirements, higher yields of recoverable activity and greater purification factors.     

Lectin Binding Assays for In-Process Monitoring of Sialylation in Protein Production

Many therapeutic proteins require appropriate glycosylation for their biological activities and plasma half life. Coagulation factor VIII (FVIII) is a glycoprotein which has extensive post-translational modification by N-linked glycosylation. The terminal sialic acid in the N-linked glycans of FVIII is required for maximal circulatory half life. The extent of FVIII sialylation can be determined by high pH anion-exchange chromatography coupled with a pulse electrochemical detector (HPAEC-PED), but this requires a large amount of purified protein. Using FVIII as a model, the objective of the present study was to develop assays that enable detection and prediction of sialylation deficiency at an early stage in the process and thus prevent downstream product quality excursions. Lectin ECA (Erythrina Cristagalli) binds to unsialylated Galβ1-4 GlcNAc and the ECA-binding level (i.e., terminal Gal(β1-4) exposure) is inversely proportional to the level of sialylation. By using ECA, a cell-based assay was developed to measure the global sialylation profile in FVIII producing cells. To examine the Galβ1-4 exposure on the FVIII molecule in bioreactor tissue culture fluid (TCF), an ELISA-based ECA-FVIII binding assay was developed. The ECA-binding specificity in both assays was assessed by ECA-specific sugar inhibitors and neuraminidase digestion. The ECA-binding specificity was also independently confirmed by a ST3GAL4 siRNA knockdown experiment. To establish the correlation between Galβ1-4 exposure and the HPAEC-PED determined FVIII sialylation value, the FVIII containing bioreactor TCF and the purified FVIII samples were tested with ECA ELISA binding assay. The results indicated an inverse correlation between ECA binding and the corresponding HPAEC-PED sialylation value. The ECA-binding assays are cost effective and can be rapidly performed, thereby making them effective for in-process monitoring of protein sialylation.