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941.
Computation of state sensitivities with respect to parameters can be a difficult and costly numerical problem when the number of states and parameters is large, or when sensitivities must be computed repeatedly, as with many optimization algorithms. Four methods are evaluated in terms of solution accuracy, and computer-time and storage requirements: direct numerical integration of the complete sensitivity-system differential equations, a reduced-order method based on the controllable states of the sensitivity system, a numerical-quadratures technique applied directly to the analytic solution of the original system, and an approach based on the solution of the transition matrix. Three linear system models, with four different types of inputs, were used as test cases, the largest having 6 states and 12 parameters. The reduced-order method was the most time-efficient in a majority of cases, but it was prone to numerical instability problems in certain situations which may be encountered in applications. It also had the largest storage requirements. For the highest-order system, only direct numerical integration and the transition-matrix method produced sufficiently accurate results for most applications, because of matrix-inversion problems with the other methods. For impulse inputs, the transition-matrix and the numerical-quadratures methods overall were the most computationally efficient, but the transition-matrix approach required much more memory storage. 相似文献
942.
Todd J Menkhaus Sara U Eriksson Paul B Whitson Charles E Glatz 《Biotechnology and bioengineering》2002,77(2):148-154
Host selection can be a strategy to simplify downstream processing for protein recovery. Advancing capabilities for using plants as hosts offers new host opportunities that have received only limited attention from a downstream processing perspective. Here, we investigated the potential of using a polycationic precipitating agent (polyethylenimine; PEI) to precipitate an acidic model protein (beta-glucuronidase; GUS) from aqueous plant extracts. To assess the potential of host selection to enhance the ease of recovery, the same procedure was applied to oilseed extracts of canola, corn (germ), and soy. For comparison, PEI precipitation of GUS was also evaluated from a crude bacterial fermentation broth. Two versions of the target protein were investigated--the wild-type enzyme (WTGUS) and a genetically engineered version containing 10 additional aspartates on each of the enzyme's four homologous subunits (GUSD10). It was found that canola was the most compatible expression host for use with this purification technique. GUS was completely precipitated from canola with the lowest dosage of PEI (30 mg PEI/g total protein), and over 80% of the initial WTGUS activity was recovered with 18-fold purification. Precipitation from soy gave yields over 90% for WTGUS but only 1.3-fold enrichment. Corn, although requiring the most PEI relative to total protein to precipitate (210 mg PEI/g total protein for 100% precipitation), gave intermediate results, with 81% recovery of WTGUS activity and a purification factor of 2.6. The addition of aspartate residues to the target protein did not enhance the selectivity of PEI precipitation in any of the systems tested. In fact, the additional charge reduced the ability to recover GUSD10 from the precipitate, resulting in lower yields and enrichment ratios compared to WTGUS. Compared to the bacterial host, plant systems provided lower polymer dosage requirements, higher yields of recoverable activity and greater purification factors. 相似文献
943.
944.
945.
Weiduan Xu Jianmin Chen Glenn Yamasaki John E. Murphy Baisong Mei 《Molecular biotechnology》2010,45(3):248-256
Many therapeutic proteins require appropriate glycosylation for their biological activities and plasma half life. Coagulation
factor VIII (FVIII) is a glycoprotein which has extensive post-translational modification by N-linked glycosylation. The terminal
sialic acid in the N-linked glycans of FVIII is required for maximal circulatory half life. The extent of FVIII sialylation
can be determined by high pH anion-exchange chromatography coupled with a pulse electrochemical detector (HPAEC-PED), but
this requires a large amount of purified protein. Using FVIII as a model, the objective of the present study was to develop
assays that enable detection and prediction of sialylation deficiency at an early stage in the process and thus prevent downstream
product quality excursions. Lectin ECA (Erythrina Cristagalli) binds to unsialylated Galβ1-4 GlcNAc and the ECA-binding level (i.e., terminal Gal(β1-4) exposure) is inversely proportional
to the level of sialylation. By using ECA, a cell-based assay was developed to measure the global sialylation profile in FVIII
producing cells. To examine the Galβ1-4 exposure on the FVIII molecule in bioreactor tissue culture fluid (TCF), an ELISA-based
ECA-FVIII binding assay was developed. The ECA-binding specificity in both assays was assessed by ECA-specific sugar inhibitors
and neuraminidase digestion. The ECA-binding specificity was also independently confirmed by a ST3GAL4 siRNA knockdown experiment.
To establish the correlation between Galβ1-4 exposure and the HPAEC-PED determined FVIII sialylation value, the FVIII containing
bioreactor TCF and the purified FVIII samples were tested with ECA ELISA binding assay. The results indicated an inverse correlation
between ECA binding and the corresponding HPAEC-PED sialylation value. The ECA-binding assays are cost effective and can be
rapidly performed, thereby making them effective for in-process monitoring of protein sialylation. 相似文献
946.
947.
Maintaining up-to-date annotation on reference genomes is becoming more important, not less, as the ability to rapidly and
cheaply resequence genomes expands. 相似文献
948.
Malliya Gounder Palanichamy Cai-Ling Zhang Bikash Mitra Boris Malyarchuk Miroslava Derenko Tapas Kumar Chaudhuri Ya-Ping Zhang 《BMC evolutionary biology》2010,10(1):304
Background
Tracing the genetic origin of central European farmer N1a lineages can provide a unique opportunity to assess the patterns of the farming technology spread into central Europe in the human prehistory. Here, we have chosen twelve N1a samples from modern populations which are most similar with the farmer N1a types and performed the complete mitochondrial DNA genome sequencing analysis. To assess the genetic and phylogeographic relationship, we performed a detailed survey of modern published N1a types from Eurasian and African populations. 相似文献949.
Dane Bicanic Darko Dimitrovski Svjetlana Luterotti Ksenija Marković Charlotte van Twisk Josephus G. Buijnsters Otto Dóka 《Food biophysics》2010,5(1):24-33
The trans-lycopene content of fresh tomato homogenates was assessed by means of the laser photoacoustic spectroscopy, the laser optothermal
window, micro-Raman spectroscopy, and colorimetry; none of these methods require the extraction from the product matrix prior
to the analysis. The wet chemistry method (high-performance liquid chromatography) was used as the absolute quantitative method.
Analytical figures of merit for all methods were compared statistically; best linear correlation was achieved for the chromaticity
index a* and chroma C*. 相似文献
950.
Igor Lipušček Marko Bohanec Leon Oblak Lidija Zadnik Stirn 《The International Journal of Life Cycle Assessment》2010,15(4):359-367