Structural and functional characterization of polyethylene terephthalate hydrolase from Ideonella sakaiensis

Polyethylene terephthalate (PET) hydrolase from Ideonella sakaiensis (IsPETase) can be used to degrade PET. In order to use IsPETase in industry, we studied the enzymatic activity of IsPETase in different conditions containing environmental and physicochemical factors commonly found in nature. We observed that salts and glycerol enhanced the enzymatic activity, while detergents and organic solvents reduced the enzymatic activity. IsPETase hydrolyzed p-nitrophenyl (p-NP) esters instead of naphthyl esters. To make IsPETase an enzyme capable of hydrolyzing naphthyl esters, site-directed mutagenesis was carried out based on the structural information provided by the crystal structure. We found that the IsPETase^S93M, IsPETase^W159F, and IsPETase^N241F mutants can hydrolyze naphthyl esters. IsPETase engineering can direct researchers to use this α/β-hydrolase protein scaffold to design enzymes that can hydrolyze a variety of polyesters.     

中国淡水养殖池塘环境生态修复技术研究评述

传统的淡水池塘养殖所面临的环境问题日益严重,池塘环境生态修复技术的研究正蓬勃兴起.以“鱼-菜共生”模式为代表的原位修复技术和以循环水养殖模式为代表的异位修复技术是当前研究的重点.本文从水体富营养化的角度,以池塘氮循环为切入点,评述了这两种养殖池塘环境生态修复模式的优缺点,并对其涉及的面积配置关系进行了探讨.评述结果认为,只能通过“鱼-菜共生”模式降低池塘养殖的产排污系数,但通过推广该模式实现全国池塘养殖生态收支的平衡是困难的.虽然循环水养殖模式无法避免产生额外的经济成本和土地资源,但在局部地区,特别是富营养化严重的区域,其零排放的特点使其推广应用有一定的生态价值.     

中国三黄鸡可溶性B淋巴细胞刺激因子基因的克隆、表达和活性研究

通过逆转录-聚合酶链式反应,从中国三黄鸡脾组织细胞中扩增得到459bp的鸡可溶性B淋巴细胞刺激因子(CycsBAFF)基因片段,将其克隆入原核表达载体pET-28a,转化大肠杆菌BL21(DE3)后高效表达了带有His6标签的包涵体形式重组蛋白,通过聚丙烯酰胺凝胶电泳及免疫转印检测鉴定。表达产物经Ni2 -NTA纯化后,经透析复性得到活性目的蛋白,通过单独刺激以及与PMA共刺激体外培养的鸡法氏囊B细胞,均有明显的促法氏囊B细胞存活的效应。     

Pyrosequencing Reveals Contrasting Soil Bacterial Diversity and Community Structure of Two Main Winter Wheat Cropping Systems in China

Microbes are key components of the soil environment, playing an important role in maintaining soil health, sustainability, and productivity. The composition and structure of soil bacterial communities were examined in winter wheat–rice (WR) and winter wheat–maize (WM) cropping systems derived from five locations in the Low-Middle Yangtze River plain and the Huang-Huai-Hai plain by pyrosequencing of the 16S ribosomal RNA gene amplicons. A total of 102,367 high quality sequences were used for multivariate statistical analysis and to test for correlation between community structure and environmental variables such as crop rotations, soil properties, and locations. The most abundant phyla across all soil samples were Proteobacteria, Acidobacteria, and Bacteroidetes. Similar patterns of bacterial diversity and community structure were observed within the same cropping systems, and a higher relative abundance of anaerobic bacteria was found in WR compared to WM cropping systems. Variance partitioning analysis revealed complex relationships between bacterial community and environmental variables. The effect of crop rotations was low but significant, and interactions among soil properties, locations, and crop rotations accounted for most of the explained variation in the structure of bacterial communities. Soil properties such as pH, available P, and available K showed higher correlations (positive or negative) with the majority of the abundant taxa. Bacterial diversity (the Shannon index) and richness (Chao1 and ACE) were higher under WR than WM cropping systems.     

利用农杆菌介导的瞬时表达系统研究CYC类TCP蛋白的亚细胞定位

CYCLOIDEA（CYC）类TCP基因在豆科与玄参科植物中都参与了两侧对称花型的发育,但它们的具体功能有明显的差异。通过在豌豆花瓣中建立农杆菌EHA105介导的瞬时表达系统,观察到豆科植物百脉根和玄参科植物金鱼草的CYC类TCP蛋白亚细胞定位有明显区别。     

刚毛柽柳S-腺苷甲硫氨酸合成酶(ThSAMS)基因的克隆及表达分析

通过对刚毛柽柳转录组分析,克隆获得了一条与S-腺苷甲硫氨酸合成酶(SAMS)基因同源性高的基因,命名为ThSAMS。序列分析结果表明:ThSASM基因全长cDNA为1185bp,编码394个氨基酸,编码蛋白相对分子质量为97.85kDa,理论等电点为5.02。通过生物信息学分析表明,ThSASM基因编码的氨基酸与其他物种SAMS基因编码的氨基酸具有很高的同源性,其中与枣的同源性最高,达95%。实时荧光定量PCR(quantitativereal-timePCR,qRT-PCR)分析表明,ThSASM表达受NaCl、聚乙二醇(PEG)和ABA处理做出应答,暗示ThSASM可能参与了刚毛柽柳对盐和干旱的胁迫应答,为进一步研究SAMS基因在植物胁迫应答中的功能及作用机制提供了参考依据。     

A Microfluidic Platform for Precision Small-volume Sample Processing and Its Use to Size Separate Biological Particles with an Acoustic Microdevice

A major advantage of microfluidic devices is the ability to manipulate small sample volumes, thus reducing reagent waste and preserving precious sample. However, to achieve robust sample manipulation it is necessary to address device integration with the macroscale environment. To realize repeatable, sensitive particle separation with microfluidic devices, this protocol presents a complete automated and integrated microfluidic platform that enables precise processing of 0.15–1.5 ml samples using microfluidic devices. Important aspects of this system include modular device layout and robust fixtures resulting in reliable and flexible world to chip connections, and fully-automated fluid handling which accomplishes closed-loop sample collection, system cleaning and priming steps to ensure repeatable operation. Different microfluidic devices can be used interchangeably with this architecture. Here we incorporate an acoustofluidic device, detail its characterization, performance optimization, and demonstrate its use for size-separation of biological samples. By using real-time feedback during separation experiments, sample collection is optimized to conserve and concentrate sample. Although requiring the integration of multiple pieces of equipment, advantages of this architecture include the ability to process unknown samples with no additional system optimization, ease of device replacement, and precise, robust sample processing.     

几个棉花核不育抗虫杂交种(F1)的抗虫性及经济性状分析

用两个不抗虫和一个抗虫的核不育系为母本,用抗虫品系为父本,配制3个杂交组合(GA×HB、GA5×R27、GA18×HB),研究分析杂交种的抗虫性、产量性状和纤维品质.结果表明3个杂交组合均高抗棉红铃虫,GA5×R27和GA18×HB以及GA×HB分别抗、中抗棉铃虫;3个组合的产量和纤维品质均优于对照.用核不育系作母本,特别是用抗虫核不育系作母本生产抗虫杂种,比用人工去雄生产杂种种子成本低,且有较好的抗虫性和丰产性,因而在棉花生产上具有更加广阔的应用前景.     

Decreased methylation of the major mouse long interspersed repeated DNA during aging and in myeloma cells

Sequences of DNA that hybridize on Southern blots with cloned EcoR1 1.3 kb (ER1) of long interspersed repeated sequence (L1Md) of mouse have been examined in genomic DNA of neonatal mice, livers and brains of adult mice (3, 10, 27, and 30 mo old), and the solid myeloma tumor MOPC-315. The isoschizomers Hpa II (CCGG or mCCGG) and Msp I (CCGG or CmCGG) were used to assess methylation. We found that the L1Md sequence is fully methylated in young animals but demethylated in myeloma. Demethylation of L1Md sequence also occurred in aged animals. By scanning the autoradiogram, we found that approximately 8% of the 10(4)-10(5) copies have been demethylated in 27-mo-old liver.