元蛋白质组分析——研究微生物生态功能的新途径

随着对微生物纯化培养和元基因组学研究的不断深入,积累了大量的微生物基因组信息,元蛋白组分析将促进我们对基因组功能的理解。目前,对微生物群落的元蛋白质组(metaproteome)的研究已成为后基因组时代进一步认识微生物生态功能的有效途径。对这一新技术的介绍结合元蛋白质组的提取和鉴定方法、元蛋白质组在研究微生物生态功能上的应用进行了综述,并对这一新的研究领域所面临的困难与挑战进行了讨论。     

光量与球蚜发生关系的研究

在小兴安岭原始林内和采伐迹地上,发现以下几种球蚜:落叶松球蚜(Adelges laricisVall.),落叶松绿球蚜(Sacchiphanles viridis Ratz.)、落叶松红瘿球蚜(S. rosegallis Liet Tsai)、冷杉球蚜(Aphrastasia pectinatae Chol.) 以及红松球蚜(Pineus cembraepinilcoreanus Zhang et Fang),它们在林内分布和大量发生,其原因除了针叶树种类和树木     

Cost-effectiveness evaluation of different control strategies for Clonorchis sinensis infection in a high endemic area of China: A modelling study

Clonorchiasis is an important food-borne parasitic disease caused by Clonorchis sinensis infection. The evaluation of long-term cost-effectiveness of control strategies is important for disease control and prevention. The present study aimed to assess the cost-effectiveness of the three recommended strategies (i.e., WHO, Chinese and Guangdong strategies) and different combinations of commonly used measures (i.e., preventive chemotherapy, information, education, and communication (IEC) and environmental improvement) on clonorchiasis. The study area, Fusha town in Guangdong Province, was a typical high endemic area in China. The analysis was based on a multi-group transmission model of C. sinensis infection. We set the intervention duration for 10 years and post-intervention period for 50 years. The corresponding costs and DALYs were estimated. Strategies with incremental cost-effectiveness ratios (ICERs) less than 1/5 of the willingness-to-pay threshold were identified as highly cost-effective strategies. The optimal control strategy was obtained using the next best comparator method. The ICERs of Guangdong strategy were $172 (95% CI: $143-$230) US for praziquantel and $106 (95% CI: $85-$143) US for albendazole, suggesting the highest cost-effectiveness among the three recommended strategies. For praziquantel, 470 sets of control strategies were identified as highly cost-effective strategies for achieving infection control (prevalence<5%). The optimal strategy consisted of chemotherapy targeted on at-risk population, IEC and environmental improvement, with coverages all being 100%, and with the ICER of $202 (95% CI: $168-$271) US. The results for transmission control (prevalence<1%) and albendazole were obtained with the same procedures. The findings may help to develop control policies for C. sinensis infection in high endemic areas. Moreover, the method adopted is applicable for assessment of optimal strategies in other endemic areas.     

Genetic validation of Aspergillus fumigatus phosphoglucomutase as a viable therapeutic target in invasive aspergillosis

Aspergillus fumigatus is the causative agent of invasive aspergillosis, an infection with mortality rates of up to 50%. The glucan-rich cell wall of A. fumigatus is a protective structure that is absent from human cells and is a potential target for antifungal treatments. Glucan is synthesized from the donor uridine diphosphate glucose, with the conversion of glucose-6-phosphate to glucose-1-phosphate by the enzyme phosphoglucomutase (PGM) representing a key step in its biosynthesis. Here, we explore the possibility of selectively targeting A. fumigatus PGM (AfPGM) as an antifungal treatment strategy. Using a promoter replacement strategy, we constructed a conditional pgm mutant and revealed that pgm is required for A. fumigatus growth and cell wall integrity. In addition, using a fragment screen, we identified the thiol-reactive compound isothiazolone fragment of PGM as targeting a cysteine residue not conserved in the human ortholog. Furthermore, through scaffold exploration, we synthesized a para-aryl derivative (ISFP10) and demonstrated that it inhibits AfPGM with an IC₅₀ of 2 μM and exhibits 50-fold selectivity over the human enzyme. Taken together, our data provide genetic validation of PGM as a therapeutic target and suggest new avenues for inhibiting AfPGM using covalent inhibitors that could serve as tools for chemical validation.     

祁连山典型流域谷地植被斑块演变与土壤性状

植物群落演变与土壤性状变化之间的相互作用和过程研究对于认识生态系统结构和功能演变有着重要的意义.对祁连山谷地灌丛草甸退化演变过程中植物群落物种组成、土壤物理和化学性状特征、及土壤与植被的相互作用进行了研究,结果表明,在祁连山谷地阴坡林线以下较小的空间范围,植被斑块由金露梅群落向金露梅-马蔺群落斑块和马蔺群落斑块演变,植被盖度降低,但物种多样性增加.不同植被斑块之间土壤水分有显著的梯度变化,土壤水分的变化导致植被的退化演替.植被斑块的演变导致土壤性状的明显分异,从金露梅灌丛斑块向金露梅-马蔺群落斑块和马蔺群落斑块演变,土壤容重显著增加,土壤团聚体组成由大粒级的大团聚体(》1mm)破碎为小粒级的大团聚体(1-0.25mm)和微团聚体(《0.25mm),团聚体稳定性降低,表明土壤结构的退化;土壤有机碳含量下降了31.2%和55.9%,干筛各粒级土壤团聚体中有机碳含量金露梅-马蔺群落斑块和马蔺群落斑块显著低于金露梅斑块,土壤团聚体平均重量粒径与有机碳含量存在显著相关,植被退化演变中土壤有机碳的损失部分地由于团聚体的破碎引起;土壤全氮和有效氮不同斑块之间也有显著的差异,植被斑块退化演变使氮的有效性降低;但磷、钾养分对植被变化的响应不敏感.植被的退化演变使土壤团聚体破碎、土壤结构退化,有机碳和全氮含量下降,使其抗侵蚀能力和水源涵养功能显著降低,又进一步加速植被的退化演替.在气候变暖的趋势下,马蔺斑块将进一步向林线逼近,灌丛草甸植被将会进一步退化和萎缩.     

粤东柘林湾中肋骨条藻（Skeletonema costatum）种群生态学

于2000年5月~2004年12月对粤东大规模养殖区柘林湾的赤潮藻中肋骨条藻（Skeletonema costatum）种群的时空分布进行了长达5a的调查。结果表明,中肋骨条藻种群密度的周年变动模式基本为双峰型,平面分布没有显著的空间差异。调查期间,中肋骨条藻种群密度的站位实测值为0~1.4×10⁷ cells/dm³,总均值为3.3×10⁵ cells/dm³,占浮游植物总细胞数的67.1%,为调查海区第1优势种。在总共1045份样品中,有中肋骨条藻出现的样品数为1020份。其中,种群密度大于10⁶ cells/dm3的样品有65份,大于10⁷ cells/dm³则有4份。以大于10⁶ cells/dm³为中肋骨条藻的赤潮密度标准,在调查期间至少于2000年、2003年发生4次赤潮。运用灰关联理论对中肋骨条藻种群密度与13个环境因子的关系进行排序分析发现,水温、pH值和浮游动物是影响柘林湾中肋骨条藻种群时空分布的关键因子。水温还与中肋骨条藻种群密度的对数值具极显著意义的线性关系,而达到赤潮密度的样品均落在24.5~32.0℃区间,即每年的5~9月份高温季节。由于柘林湾浮游动物的年高峰期也出现在高温季节,说明浮游动物摄食压力的存在可能是柘林湾中肋骨条藻赤潮发生的重要抑制因子。2004年调查海区中肋骨条藻种群密度和在浮游植物群落中的优势度骤然降低,可能与水体营养盐结构和Fe含量的变化有关。因此,长期调查与监测对于研究海湾生态学和赤潮发生机制是极为重要的。     

属模巨齿蛉末龄幼虫的打洞行为研究

本文以属模巨齿蛉为例,首次研究了广翅目末龄幼虫化蛹前的打洞行为及洞穴类型。试验通过昼夜录像等手段,较为详细地分析了属模巨齿蛉末龄幼虫的打洞行为,并对洞穴进行解剖、测量和拍照,获得了洞穴的相应数据和类型。研究结果表明,属模巨齿蛉末龄幼虫的打洞行为主要包括寻找洞址、用大颚衔土建洞、封洞等过程,主要在19∶00-次日12∶00时间段打洞,选择有遮蔽物的地方作为洞址;在选址或打洞的过程中,有时会出现多头幼虫争夺洞址的现象;打洞时,幼虫主要是用大颚衔土,衔土频率为1-12次/min,或用整个头部前端铲土,通过腹部肌肉伸缩为头部挖土提供动力;幼虫在打洞期间会有不同的休息时间,建造一个洞穴大约需要累计时间120-250 min,一次连续打洞的时间为37 s-17 min;洞穴类型分为封口洞穴和开口洞穴2大类,其中封口洞穴有5种类型,开口洞穴有2种类型;洞穴深度为3.0-7.5 cm,洞内最大直径为2.5-5.0 cm;幼虫在预蛹期间还可以从洞穴中爬出来到水中取食,之后再返回洞中。     

Hemin with Peroxidase Activity Can Inhibit the Oxidative Damage Induced by Ultraviolet A

Excessive reactive oxygen species (ROS), a highly reactive substance that contains oxygen, induced by ultraviolet A (UVA) cause oxidative damage to skin. We confirmed that hemin can catalyze the reaction of tyrosine (Tyr) and hydrogen peroxide (H₂O₂). Catalysis was found to effectively reduce or eliminate oxidative damage to cells induced by H₂O₂ or UVA. The scavenging effects of hemin for other free-radical ROS were also evaluated through pyrogallol autoxidation, 1,1-diphenyl-2-picrylhydrazyl radical (DPPH·)-scavenging assays, and phenanthroline–Fe²⁺ assays. The results show that a mixture of hemin and tyrosine exhibits strong scavenging activities for H₂O₂, superoxide anion (O₂⁻·), DPPH·, and the hydroxyl radical (·OH). Furthermore, the inhibition of oxidative damage to human skin keratinocyte (HaCaT) cells induced by H₂O₂ or UVA was evaluated. The results show that catalysis can significantly reduce the ratio of cell apoptosis and death and inhibit the release of lactate dehydrogenase (LDH), as well as accumulation of malondialdehyde (MDA). Furthermore, the resistance to apoptosis was found to be enhanced. These results show that the mixture of hemin and tyrosine has a significantly protective effect against oxidative damage to HaCaT cells caused by UVA, suggesting it as a protective agent for combating UVA damage.     

Studying Early Nodulin Gene ENOD40 Expression and Induction by Nodulation Factor and Cytokinin in Transgenic Alfalfa

ENOD40, an early nodulin gene, is expressed following inoculation with Rhizobium meliloti or by adding R. meliloti-produced nodulation (Nod) factors or the plant hormone cytokinin to uninoculated roots. We isolated two MsENOD40 clones, designated MsENOD40–1 and MsENOD40–2, with distinct promoters from an alfalfa (Medicago sativa cv Chief) genomic library. The promoters were fused to the reporter gene uidA (gus), and the constructs were introduced into alfalfa. We observed that the MsENOD40–1 construct was expressed almost exclusively under symbiotic conditions. The MsENOD40–2 construct was transcribed under both symbiotic and nonsymbiotic conditions and in nonnodular and nodular tissues. Both MsENOD40 promoter-gus constructs were similarly expressed as nodules developed, and both were expressed in roots treated with 6-benzylaminopurine or purified Nod factor. However, no blue color was detected in nodule-like structures induced by the auxin transport inhibitor N-1-(naphthyl)phthalamic acid on roots of plants containing the MsENOD40–1 promoter construct, whereas pseudonodules from plants containing the MsENOD40–2 promoter construct stained blue. A 616-bp region at the distal 5′ end of the promoter is important for proper spatial expression of MsENOD40 in nodules and also for Nod-factor and cytokinin-induced expression.     

Aerobic denitrification by novel isolated strain using NO-₂-N as nitrogen source

Biological denitrification reaction can be achieved under aerobic environment. Few aerobic denitrifiers using nitrite as sole nitrogen source were identified. Using nitrite as the sole nitrogen source, this work assessed the denitrification activity of yy7, an aerobic heterotrophic denitrifier identified as Pseudomonas sp. (94% similarity) by 16S rRNA sequencing analysis. The logistic equation describes the cell growth curve, yielding a generation time of 2.9h at an initial 18 mg l(-1)NO(-)?-N. Reduction of NO(-)?-N was primarily achieved during its logarithmic growth phase, and was accompanied by an increase in suspension pH and near complete consumption of dissolved oxygen. Three genes relating to nirK, norB, and nosZ were noted to involve in isolate strain. Isolate yy7 can survive and remove up to 40 mg l(-1)NO(-)?-N and, hence, can be applied as an effective aerobic denitrifier during simultaneous nitrification and denitrification via nitrite processes.