南瓜SWEET蛋白家族的全基因组鉴定与进化分析

SWEET(sugar will eventually be exported transporter)家族是一种新型的糖转运体,该家族基因在碳水化合物运输、发育、环境适应性和寄主-病原相互作用等多个过程中发挥着重要作用.为更好地了解南瓜发育的分子机理,该研究基于已知的南瓜基因组数据库,利用生物信息学方法对中国南瓜SW...     

基于AnyBodyTM技术的人体运动建模方法

人体运动的建模与仿真是当今运动生物力学研究的一个热点.利用数值模型研究人体的运动规律,是人体运动研究的一个重要手段和有效工具.其关键技术在于应用逆向运动学方法求解人体运动,并获取人体运动中各个肌肉力学上技术参数.文中主要探讨基于AnyBodyTM System软件人体运动仿真的建模方法来研究人体运动力学规律,结合The AnyBodyTM system对人体运动具体应用,说明The AnyBodyTM system技术在人体运动仿真领域的优势.     

Monitoring the Invasion of Spartina alterniflora from 1993 to 2014 with Landsat TM and SPOT 6 Satellite Data in Yueqing Bay,China

The exotic plant Spartina alterniflora was introduced to Yueqing Bay more than 20 years ago for tidal land reclamation and as a defense against typhoons, but it has rapidly expanded and caused enormous ecological consequences. Mapping the spread and distribution of S. alterniflora is the first step toward understanding the factors that determine the population expansion patterns. Remote sensing is a promising tool to monitor the expansion of S. alterniflora. Twelve Landsat TM images and Support Vector Machine (SVM) were used to delineate the invasion of S. alterniflora from 1993 to 2009, and SPOT 6 images and Object-Based Image Analysis (OBIA) were used to map the distribution of S. alterniflora in 2014. In situ data and Unmanned Aerial Vehicle (UAV) images were used as supplementary data. S. alterniflora spread rapidly in Yueqing Bay over the past 21 years. Between 1993 and 2009, the area of S. alterniflora increased by 608 times (from 4 to 2432 ha). The rapid expansion of S. alterniflora covered almost all of the bare mudflats around the mangrove forests and the cultivated mudflats. However, from 2009 to 2014, the rate of expansion of S. alterniflora began to slow down in Yueqing Bay, and the total area of S. alterniflora in Yantian decreased by 275 ha. These phenomena can be explained by the landscape changes and ecological niches. Through the expansion of S. alterniflora, it was found that the ecological significance and environmental impact of S. alterniflora was different in different regions in Yueqing Bay. The conservation plans for Yueqing Bay should consider both the positive and negative effects of S. alterniflora, and the governmental policy should be based on the different circumstances of the regions.     

Analysis of Grain Yield Formation Components of Extra Heavy-Panicle-Type Mid-Season Indica Hybrid Rice

Journal of Plant Growth Regulation - Rice is the most important food crop species of the developing world, and there are increasing concerns about food security to increase rice yields...     

Genome-wide SNP identification for the construction of a high-resolution genetic map of Japanese flounder (Paralichthys olivaceus): applications to QTL mapping of Vibrio anguillarum disease resistance and comparative genomic analysis

High-resolution genetic maps are essential for fine mapping of complex traits, genome assembly, and comparative genomic analysis. Single-nucleotide polymorphisms (SNPs) are the primary molecular markers used for genetic map construction. In this study, we identified 13,362 SNPs evenly distributed across the Japanese flounder (Paralichthys olivaceus) genome. Of these SNPs, 12,712 high-confidence SNPs were subjected to high-throughput genotyping and assigned to 24 consensus linkage groups (LGs). The total length of the genetic linkage map was 3,497.29 cM with an average distance of 0.47 cM between loci, thereby representing the densest genetic map currently reported for Japanese flounder. Nine positive quantitative trait loci (QTLs) forming two main clusters for Vibrio anguillarum disease resistance were detected. All QTLs could explain 5.1–8.38% of the total phenotypic variation. Synteny analysis of the QTL regions on the genome assembly revealed 12 immune-related genes, among them 4 genes strongly associated with V. anguillarum disease resistance. In addition, 246 genome assembly scaffolds with an average size of 21.79 Mb were anchored onto the LGs; these scaffolds, comprising 522.99 Mb, represented 95.78% of assembled genomic sequences. The mapped assembly scaffolds in Japanese flounder were used for genome synteny analyses against zebrafish (Danio rerio) and medaka (Oryzias latipes). Flounder and medaka were found to possess almost one-to-one synteny, whereas flounder and zebrafish exhibited a multi-syntenic correspondence. The newly developed high-resolution genetic map, which will facilitate QTL mapping, scaffold assembly, and genome synteny analysis of Japanese flounder, marks a milestone in the ongoing genome project for this species.     

A proteomic analysis of murine bone marrow and its response to ionizing radiation

To characterize the mouse bone marrow tissue proteome and investigate the response to radiation damage we took bone marrow before and after 4-Gy gamma-irradiation from mouse strains (C57BL/6 and CBA/Ca) that differ in their short-term and long-term radiation responses and analyzed extracellular proteins by high-resolution 2-DE. Twenty proteins were identified from 71 protein spots in both C57BL/6 and CBA/Ca. We detected significant differences between control and irradiated bone marrow and between genotypes and identified many of the changed proteins by MS. In C57BL/6, 27 spots were significantly different between control and irradiated samples. In CBA/Ca, 18 spots showed significant changes following irradiation. Proteins such as serum albumin, apolipoprotein A-I, ferritin, haptoglobin (Hp) and alpha-1-antitrypsin were changed in irradiated bone marrow of both mouse strains, reflecting an ongoing acute-phase reaction. Several other proteins including serotransferrin, neutrophil collagenase, peroxiredoxin 2 and creatine kinase M chain were changed specifically in an individual mouse strain. The proteomic approach makes an important contribution to characterizing bone marrow proteome and investigating the tissue response of bone marrow to radiation, assists in identifying genotype-dependent responses and provides support for the importance of microenvironmental factors contributing to the overall response.