Molecular dynamics simulations of phenylimidazole inhibitor complexes of cytochrome P450 cam

Molecular dynamics simulations have been performed on three phenylimidazole inhibitor complexes ofP450 _cam, utilizing the X-ray structures and the AMBER suite of programs. Compared to their corresponding optimized X-ray structures, very similar features were observed for the 1-phenylimidazole (1-PI) and 2-phenylimidazole (2-PI) complexes during a 100 ps MD simulation. The 1-PI inhibitor binds as a Type II complex with the imidazole nitrogen as a ligand of the heme iron. Analysis of the inhibitor-enzyme interctions during the MD simulations reveals that electrostatic interactions of the imidazole with the heme and van der Waals interactions of the phenyl ring with nearby hydrophobic residues are dominant. By contrast, 2-PI binds as a Type I inhibitor in the substrate binding pocket, but not as a ligand of the iron. The interactions of this inhibitor are qualitatively different from that of the Type II 1-PI, being mainly electrostatic/H-bonding interactions with a bound water and polar residues. Although the third compound, 4-PI, in common with 1-PI, also binds as a Type II inhibitor, with one nitrogen of the imidazole as a ligand to the iron, the MD average binding orientation deviates significantly from the X-ray structure. The most important changes observed include: (1) the rotation of the imidazole ring of this inhibitor by about 90° to enhance electrostatic interactions of the imidazole NH group with the carbonyl group of LEU244, and (2) the rotation of the carbonyl group of ASP251 to form a H-bond with VAL254. An analysis of the H-bonding network surrounding this substrate in the optimized crystal structure revealed that there is no H-bonding partner either for the free polar NH group in the imidazole ring of 4-phenylimidazole or for the polar carbonyl group of the nearby ASP251 residue. The deviation of the dynamically averaged inhibitor-enzyme structure of the 4-PI complex from the optimized crystal structure can therefore be rationalized as a consequence of the optimization of the electrostatic interactions among the polar groups.     

The PiGMaP consortium linkage map of the pig (Sus scrofa)

A linkage map of the porcine genome has been developed by segregation analysis of 239 genetic markers. Eighty-one of these markers correspond to known genes. Linkage groups have been assigned to all 18 autosomes plus the X Chromosome (Chr). As 69 of the markers on the linkage map have also been mapped physically (by others), there is significant integration of linkage and physical map data. Six informative markers failed to show linkage to these maps. As in other species, the genetic map of the heterogametic sex (male) was significantly shorter (16.5 Morgans) than the genetic map of the homogametic sex (female) (21.5 Morgans). The sex-averaged genetic map of the pig was estimated to be 18 Morgans in length. Mapping information for 61 Type I loci (genes) enhances the contribution of the pig gene map to comparative gene mapping. Because the linkage map incorporates both highly polymorphic Type II loci, predominantly microsatellites, and Type I loci, it will be useful both for large experiments to map quantitative trait loci and for the subsequent isolation of trait genes following a comparative and candidate gene approach.     

Recent advances in plant cell cultures in bioreactors

Two key issues in the application of plant-cell-culture technology to the production of valuable secondary metabolites are reviewed: the selection of cell lines with suitable genetic, biochemical and physiological characteristics; and the optimization of bioreactor environments. Although great progress has been made in recent years in the design, selection and optimization of bioreactor hardware, optimization of environmental factors such as medium components, light irradiation and O₂ supply needs detailed investigations for each case. With a better understanding of plant cell metabolism and physiology, further developments in cultivation processes, such as process integration and on-line monitoring and control, can be expected in the near future.J.-J. Zhong and J.-T. Yu are with the Research Institute of Biochemical Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China T. Yoshida is with the International Center of Cooperative Research in Biotechnology (ICBiotech), Faculty of Engineering, Osaka University, Suita, Osaka 565, Japan.     

高邮杂交鲫（鲫♀×白鲫）及其亲本血清生化组成的比较研究

本文对高邮杂交鲫（鲫♀×白鲫♂）及其亲本血清生化组成的定量分析。结果表明,在测定的血清总蛋白、白蛋白、胆固醇、尿素氮、葡萄糖、乳酸脱氢酶、ａ－羟丁酸脱氢酶、ａ－淀粉酶和谷草转氨酶等九个生化指标中,大部分指标高邮杂交鲫与母本无显著差异,而与父本则有极显著差异。这从代谢方面论证了高邮杂交鲫是一个偏向于母本的杂交种。     

软骨血管生成抑制因子抑制血管生成的研究

小牛气管软骨经盐酸胍抽提,丙酮分级沉淀,膜超滤,柱层析等步骤得到软骨血管生成抑制因子(cartilage angiogenesis inhibiting factor,CAIF).SDS-聚丙烯酰胺凝胶电泳显示CAIF由单一组分组成,分子量为27700.通过[ ³H]-TdR掺入,活细胞检测等方法测定CAIF对内皮细胞、Hela细胞、QGY7703细胞与小鼠骨髓细胞、人皮肤成纤维细胞等的DNA合成的影响,以及细胞毒作用.采用鸡胚绒毛尿囊膜实验测定CAIF对血管生成的抑制效应.结果显示:CAIF对内皮细胞产生强的抑制作用,对Hela细胞抑制很弱,对QGY7703细胞、小鼠骨髓细胞、人皮肤成纤维细胞均无抑制作用;对鸡胚绒毛尿囊膜的血管生成产生明显的抑制作用.提示CAIF能较特异地抑制血管生成,CAIF达到电泳纯,是专一性较强的血管生成抑制因子.     

峨嵋山冷杉森林衰退状况研究

报道和分析了峨嵋山冷杉森林的衰退状况。对冷杉种群的受害程度、分布规律、症状特点及其与海拔、特定生境、立木径级和林型的关系进行了研究分析。指出峨嵋山冷杉森林衰退是全球森林衰退的组成部份,而不是个别的或偶然的现象;肯定了当地冷杉林衰退具有某些个性特征。由此认为,导致当地冷杉衰退的主要原因可能是某种或某些作用范围广、持续时间长、发生频率高、对全球森林系统构成威胁的因素所致。     

动物鸣叫声计算机分析

动物鸣叫声计算机分析姜仕仁,丁平,施青松诸葛阳（杭州大学生物科学与技术系３１００１２）ＣｏｍｐｕｔｅｒＡｎａｌｙｓｉｓｏｆＡｎｉｍａｌ’ｓＣａｌｌｉｎｇＳｏｕｎｄ￥ＪｉａｎｇＳｈｉｒｅｎ,Ｄｉｎｇ,Ｐｉｎｇ,ＳｈｉＱｉｎｇｓｏｎｇ,ＺｈｕｇｅＹａｎｇ...     

多管藻中R－藻蓝蛋自的分离、结晶和初步晶体学研究

从青岛采集的多管藻（Ｐｏｌｙｓｉｐｈｏｎｉａｕｒｃｅｏｌａｔａ）中分离得到的Ｒ－藻蓝蛋白,在ｐＨ＝７．０的０．０５ｍｏｌ／Ｌ磷酸盐－硫酸铵缓冲液中,使用悬滴气相扩散法获得适合Ｘ光衍射分析用单晶。经Ｂｕｅｒｇｅｒ徘循照相和ＸＲＤ—１００面探测仪分析,Ｒ－藻蓝蛋白晶体属于四方晶系,空间群为Ｐ４１（３）２１２,晶胞参数：ａ＝ｂ＝１３７．５ｃ＝２１８．５α＝β＝γ＝９０°。用等比重梯度柱法测定了晶体和母液的比重分别为１．１９和１．０９。根据分子量与晶胞体积估算,一个不对称单位含有一个分子,推测它的分子聚集态形式为（αβ）３。     

脑干内的混沌

对脑干听觉诱发电位进行了非线性动力学分析,计算了关联维数Ｄ２和最大Ｌｙａｐｕｎｏｖ特征指数,确认ＢＡＥＰ是一个来源于低维混沌动力系统的时间序列,从而证明人类脑干存在着混沌现象,利用满足最小互信息标准的最佳延迟重构了二维混沌吸引子。