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Chakravarty MM Aleong R Leonard G Perron M Pike GB Richer L Veillette S Pausova Z Paus T 《PloS one》2011,6(5):e20241
Quantitative analysis of craniofacial morphology is of interest to scholars
working in a wide variety of disciplines, such as anthropology, developmental
biology, and medicine. T1-weighted (anatomical) magnetic resonance images (MRI)
provide excellent contrast between soft tissues. Given its three-dimensional
nature, MRI represents an ideal imaging modality for the analysis of
craniofacial structure in living individuals. Here we describe how T1-weighted
MR images, acquired to examine brain anatomy, can also be used to analyze facial
features. Using a sample of typically developing adolescents from the Saguenay
Youth Study (N = 597; 292 male, 305 female, ages: 12 to 18
years), we quantified inter-individual variations in craniofacial structure in
two ways. First, we adapted existing nonlinear registration-based morphological
techniques to generate iteratively a group-wise population average of
craniofacial features. The nonlinear transformations were used to map the
craniofacial structure of each individual to the population average. Using
voxel-wise measures of expansion and contraction, we then examined the effects
of sex and age on inter-individual variations in facial features. Second, we
employed a landmark-based approach to quantify variations in face surfaces. This
approach involves: (a) placing 56 landmarks (forehead, nose, lips, jaw-line,
cheekbones, and eyes) on a surface representation of the MRI-based group
average; (b) warping the landmarks to the individual faces using the inverse
nonlinear transformation estimated for each person; and (3) using a principal
components analysis (PCA) of the warped landmarks to identify facial features
(i.e. clusters of landmarks) that vary in our sample in a correlated fashion. As
with the voxel-wise analysis of the deformation fields, we examined the effects
of sex and age on the PCA-derived spatial relationships between facial features.
Both methods demonstrated significant sexual dimorphism in craniofacial
structure in areas such as the chin, mandible, lips, and nose. 相似文献
97.
Systems Biology involves the study of the interactions of biological systems and ultimately their functions. Down''s syndrome (DS)
is one of the most common genetic disorders which are caused by complete, or occasionally partial, triplication of chromosome 21,
characterized by cognitive and language dysfunction coupled with sensory and neuromotor deficits. Neural Tube Disorders
(NTDs) are a group of congenital malformations of the central nervous system and neighboring structures related to defective
neural tube closure during the first trimester of pregnancy usually occurring between days 18-29 of gestation. Several studies in the
past have provided considerable evidence that abnormal folate and methyl metabolism are associated with onset of DS & NTDs.
There is a possible common etiological pathway for both NTDs and Down''s syndrome. But, various research studies over the years
have indicated very little evidence for familial link between the two disorders. Our research aimed at the gene expression profiling
of microarray datasets pertaining to the two disorders to identify genes whose expression levels are significantly altered in these
conditions. The genes which were 1.5 fold unregulated and having a p-value <0.05 were filtered out and gene interaction network
were constructed for both NTDs and DS. The top ranked dense clique for both the disorders were recognized and over
representation analysis was carried out for each of the constituent genes. The comprehensive manual analysis of these genes yields
a hypothetical understanding of the lack of familial link between DS and NTDs. There were no genes involved with folic acid
present in the dense cliques. Only – CBL, EGFR genes were commonly present, which makes the allelic variants of these genes –
good candidates for future studies regarding the familial link between DS and NTDs.
Abbreviations
NTD - Neural Tube Disorders, DS - Down''s Syndrome, MTHFR - Methylenetetrahydrofolate reductase, MTRR– 5 - methyltetrahydrofolate-homocysteine methyltransferase reductase. 相似文献98.
Lahiri D Majumdar R Mallick D Goswami TK Dighe RR Chakravarty AR 《Journal of inorganic biochemistry》2011,105(8):1086-1094
Copper(II) complexes [Cu(satp)(L)] (1-3) of a Schiff base thiolate (salicylidene-2-aminothiophenol, H2satp) and phenanthroline bases (L), viz. 1,10-phenanthroline (phen in 1), dipyrido[3,2-d:2′,3′-f]quinoxaline (dpq in 2) and dipyrido[3,2-a:2′,3′-c]phenazine (dppz in 3), were prepared, characterized and their anaerobic DNA photocleavage activity and hypoxic photocytotoxicity studied. The redox active complexes show the Cu(II)-Cu(I) couple near − 0.5 V for 1 and near 0.0 V vs. SCE (saturated calomel electrode) for 2 and 3. The one-electron paramagnetic complexes (~ 1.85 μB) are avid DNA binders giving Kb values within 1.0 × 105 − 8.0 × 105 M− 1. Thermal melting and viscosity data along with molecular docking calculations suggest DNA groove and/or partial intercalative binding of the complexes. The complexes show anaerobic DNA cleavage activity in red light under argon via type-I pathway, while DNA photocleavage in air proceeds via hydroxyl radical pathway. The DFT (density functional theory) calculations reveal a thyil radical pathway for the anaerobic DNA photocleavage activity and suggest the possibility of generation of a transient copper(I) species due to bond breakage between the copper and sulfur to generate the thyil radical. An oxidation of the copper(I) species is likely by oxygen in an aerobic medium or by the buffer medium in an anaerobic condition. Complex 3 exhibits significant photocytotoxicity in HeLa cells (IC50 = 8.3(± 1.0) μM) in visible light, while showing lower dark toxicity (IC50 = 17.2(± 1.0) μM). A significant reduction in the dark toxicity is observed under hypoxic cellular conditions (IC50 = 30.0(± 1.0) μM in dark), while retaining its photocytotoxicity (IC50 = 8.0(± 1.0) μM). 相似文献
99.
Tanaka N Chakravarty AK Maughan B Shuman S 《The Journal of biological chemistry》2011,286(50):43134-43143
RtcB enzymes are a newly discovered family of RNA ligases, implicated in tRNA splicing and other RNA repair reactions, that seal broken RNAs with 2',3'-cyclic phosphate and 5'-OH ends. Parsimony and energetics would suggest a one-step mechanism for RtcB sealing via attack by the O5' nucleophile on the cyclic phosphate, with expulsion of the ribose O2' and generation of a 3',5'-phosphodiester at the splice junction. Yet we find that RtcB violates Occam's razor, insofar as (i) it is adept at ligating 3'-monophosphate and 5'-OH ends; (ii) it has an intrinsic 2',3'-cyclic phosphodiesterase activity. The 2',3'-cyclic phosphodiesterase and ligase reactions both require manganese and are abolished by mutation of the RtcB active site. Thus, RtcB executes a unique two-step pathway of strand joining whereby the 2',3'-cyclic phosphodiester end is hydrolyzed to a 3'-monophosphate, which is then linked to the 5'-OH end to form the splice junction. The energy for the 3'-phosphate ligase activity is provided by GTP, which reacts with RtcB in the presence of manganese to form a covalent RtcB-guanylate adduct. This adduct is sensitive to acid and hydroxylamine but resistant to alkali, consistent with a phosphoramidate bond. 相似文献
100.
Marečková K Weinbrand Z Chakravarty MM Lawrence C Aleong R Leonard G Perron M Pike GB Richer L Veillette S Pausova Z Paus T 《Hormones and behavior》2011,60(5):681-690
Sex identification of a face is essential for social cognition. Still, perceptual cues indicating the sex of a face, and mechanisms underlying their development, remain poorly understood. Previously, our group described objective age- and sex-related differences in faces of healthy male and female adolescents (12–18 years of age), as derived from magnetic resonance images (MRIs) of the adolescents' heads. In this study, we presented these adolescent faces to 60 female raters to determine which facial features most reliably predicted subjective sex identification. Identification accuracy correlated highly with specific MRI-derived facial features (e.g. broader forehead, chin, jaw, and nose). Facial features that most reliably cued male identity were associated with plasma levels of testosterone (above and beyond age). Perceptible sex differences in face shape are thus associated with specific facial features whose emergence may be, in part, driven by testosterone. 相似文献