Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice

Genome analysis shows that large-scale gene duplications have occurred in fungi, animals and plants, creating genomic regions that show similarity in gene content and order. However, the high frequency of gene loss reduces colinearity resulting in duplicated regions that, in the extreme, no longer share homologous genes. Here, we show that by comparison with an appropriate second genome, such paralogous regions can still be identified.     

A Personal Tribute to Bill Norton

Neurochemical Research -     

Juvenile hormones inhibit murine cell cycle progression and expression of type c viruses

Summary Juvenile hormones (JH), congeners of retinoic acid, were examined for their capacity to inhibit cell cycle progression and chemically induced expression of endogenous xenotropic retrovirus in Kirsten sarcoma virus-transformed BALB (K-BALB) mouse cells. JHI, II, and III were found to inhibit induction of virus by 5-iododeoxyuridine (IUdR) and histidinol (Hdl) in a concentration-dependent fashion. Some inhibition of macromolecular synthesis was observed upon culture of the cells with JH; the most affected was RNA synthesis, which was reduced 27 to 40% within 4 h by the juvenoids. Epoxide hydrase (EH) activity, as determined by high-pressure liquid chromatography (HPLC), was present in amounts sufficient for the cells to convert the hormones metabolically to an ultimate form. A contact-inhibited K-BALB variant was synchronized by mitotic arrest and the cell cyclespecific effect of JHIII on virus induction during S phase was studied. JHIII added during G₁ phase, and followed by induction, inhibited virus expression 95 and 76% by IUdR and Hdl, respectively. Induction was inhibited only 35% when JHIII was added during S phase concomitantly with the inducers and no inhibition was observed when JHIII was added during G₂ phase followed by the inducers. JHIII added to synchronous cells in G₁ phase inhibited progression of cells into S phase and the onset of DNa synthesis. The results indicate that mouse fibroblasts have a juvenile hormone-sensitive restriction point in G₁ phase that might relate to the effects these hormones have on cell replication and differentiation. This work was supported under Contract NO-1-CO-75380 with the National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20205.     

Step‐by‐step monitoring of a magnetic and SERS‐active immunosensor assembly for purification and detection of tau protein

We report a bottom‐up synthesis of iron oxide and gold nanoparticles, which are functionalized and combined to form a nanohybrid serving as an immune sensor, which selectively binds to tau protein, a biomarker for diagnosis of Alzheimer's disease. Detection of the target analyte is achieved by surface‐enhanced Raman scattering originating from the diagnostic part of the nanohybrid that was prepared from Au nanoparticles functionalized with 5,5′‐dithiobis‐(2‐nitrobenzoic acid) as a Raman reporter and monoclonal anti‐tau antibody. The magnetic part consists of Fe_xO_y nanoparticles functionalized with polyclonal anti‐tau antibody and is capable to separate tau protein from a complex matrix such as cerebrospinal fluid. We further identified and validated a set of analytical tools that allow monitoring the success of both nanoparticle preparation and each functionalization step performed during the assembly of the two binding sites by an immune reaction. By applying UV/Vis spectroscopy, dynamic light scattering, zeta potential measurements, X‐ray diffraction, small‐angle X‐ray scattering, and transmission electron microscopy, we demonstrate a proof‐of‐concept for a controlled and step‐by‐step traceable synthesis of a tau protein‐specific immune sensor.     

Out of sight but not out of mind: modulation of recruitment according to home range marking in ants

Animals can acquire a global knowledge about their environment that exceeds their individual capacities by estimating the local density and activity of nestmates in an area. In ants, home range marking can indicate the density and activity of nestmates, allowing scouts to assess the potential interest of the area as a foraging site. We investigated how home range marking through footprints influences the foraging behaviour of Lasius niger scouts at a sugary food source (1 M, 1.5 ml). Over a marked apparatus the discovery time of food sources decreased while the probability of scouts recruiting nestmates and of continuing to lay a trail increased. For ants making U turns on their return to the nest, home range marking helped them to resume laying a trail after the U turn and delayed the occurrence of the U turn. As a result, the trail intensity and the rate at which information about food was conveyed by scouts to nestmates depended on home range marking. Such modulation of information reduces the number of foragers mobilized to less frequented areas that are potentially dangerous and promotes recruitment and exploitation of food sources to better known sites.     

Axoplasmic asymmetry at the node of Ranvier

Brain Cell Biology - The previously described unilateral condensation of axoplasmic organelles at the node of Ranvier of large diameter fibres in spinal nerve roots has been confirmed in a single...