Higher order chromatin structure at the X-inactivation center via looping DNA

In mammals, the silencing step of the X-chromosome inactivation (XCI) process is initiated by the non-coding Xist RNA. Xist is known to be controlled by the non-coding Xite and Tsix loci, but the mechanisms by which Tsix and Xite regulate Xist are yet to be fully elucidated. Here, we examine the role of higher order chromatin structure across the 100-kb region of the mouse X-inactivation center (Xic) and map domains of specialized chromatin in vivo. By hypersensitive site mapping and chromosome conformation capture (3C), we identify two domains of higher order chromatin structure. Xite makes looping interactions with Tsix, while Xist makes contacts with Jpx/Enox, another non-coding gene not previously implicated in XCI. These regions interact in a developmentally-specific and sex-specific manner that is consistent with a regulatory role in XCI. We propose that dynamic changes in three-dimensional architecture leads to formation of separate chromatin hubs in Tsix and Xist that together regulate the initiation of X-chromosome inactivation.     

Interactions between the hemiparasitic angiospermRhinanthus minor and its hosts: From the cell to the ecosystem

Parasitic plants can significantly influence the species to which they attach. The host response is variable however, and ranges from death of the host to no detectable effects in terms of both growth and physiology. The parasite can directly influence its hosts through resource abstraction, and indirectly by influencing inter- and intra-specific interactions. Abiotic factors interact with these direct and indirect effects to moderate the potential outcome of the host parasite interaction. This paper sets out to review a series of experiments that have been undertaken in our laboratory over a number of years that examine these effects and help us to understand mechanisms underpinning the variability in host response.     

Zonation of submerged macrophyte vegetation in Lake Kariba,Zimbabwe and its ecological interpretation

The submerged vegetation of Lake Kariba is described in relation to degree of slope (lake morphometry), depth and light transparency. The direct gradient analysis technique — canonical correspondence analysis and the TWINSPAN classification programs were used to analyse the data set. The western end of the lake with low transparency has a low species diversity (with Vallisneria aethiopica dominating). Species diversity increases with increased transparency in the other parts of the lake. The classification revealed monospecific communities for all species as well as mixed communities with Lagarosiphon as the associate species with the broadest distribution. The ordination revealed a first axis strongly related to depth and transparency gradients and the second axis related to slope. Vallisneria aethiopica has a growth form adapted to grow in shallow areas subjected to wave action. Potamogeton octandrus also growing in shallow areas is restricted to sheltered areas. Lagarosiphon ilicifolius precluded from the shallow exposed areas grows at medium depth but has a growth form adapted to tap light at the surface. Najas pectinata and Ceratophyllum demersum are adapted to grow in deep water.Abbreviations CCA Canonical correspondence analysis     

Direction of locomotion in clones of non-neoplastic fibroblasts and their neoplastic derivatives

The locomotion of cloned mouse fibroblasts, non-neoplastic and their spontaneously transformed neoplastic derivatives was compared by means of cinephotomicrography. The spontaneous transformants grow as invasive transplantable sarcomas, whereas the non-neoplastic fail to grow as tumors, and do not show the diagnostic characteristics of neoplastic cells in culture; these include certain morphologic alterations, growth in soft agar, and susceptibility to killing by activated macrophages. The non-neoplastic cells tended to maintain the same direction of locomotion in sequential 2.5 h periods, whereas the neoplastic cells did not. Thus, cells in all non-neoplastic lines exhibited a “persisten” walk while cells from the neoplastic lines had a random pattern of locomotion. No relationship between cell density and randomness of locomotion was observed, and the non-neoplastic cells appeared to grow as rapidly as the neoplastic cells. However, the neoplastic cells had higher rates of locomotion possibly associated with their invasive potential in vivo. The deficient amount of lamellar cytoplasm in the neoplastic cells and the high migration rate may account for their random pattern of locomotion.     

Role of respiratory-burst products from polymorphonuclear leukocytes in the antitumor activity of Propionibacterium acnes vaccine

Summary Tumor cells injected into Balb/c mice together with heat-killed 48-h P. acnes cells were rendered nontumorigenic as early as 12 h after injection, as determined by the inability of the tumor cells to give rise to tumors when transferred to a new host. Determination of tumor cell antigen levels by ELISA indicated that the tumor antigens had virtually disappeared by 24 h after injection of tumor cells and P. acnes. In contrast, in control animals injected with tumor cells only, there was an initial drop in tumor antigen levels at 12 h, after which the level rose steadily and tumors developed in 7–10 days. Since the cellular exudate at 12 h was almost entirely composed of polymorphonuclear leukocytes (PMN), we tested the ability of PMN, stimulated by phagocytosis of 48-h P. acnes cells, to produce substances toxic to tumor cells. Results indicated that the supernatant fluid from a phagocytosis mixture of PMN and P. acnes contained material toxic to tumor cells and also to Chinese hamster ovary cells. Tests with scavengers and inhibitors of oxygen-derived radicals suggested that the toxic material is either hydrogen peroxide (H₂O₂) or hydroxyl radicals (OH). Suspensions of 12-h P. acnes, P. acnes cells walls, P. freudenrichii, or latex beads were ineffective in preventing tumor growth, and induced little toxicity when phagocytosed. We conclude that in this test system 48-h P. acnes prevents tumor growth by stimulating the production of toxic oxygen metabolites during phagocytosis by PMN.     

Changes in stereospecific distribution of yeast fatty acids with age

Stereospecific analyses of glycerolipids from 7-, 14- and 21-day-old cultures of the yeast Lipomyces lipoferus revealed that each position of the glycerolipids had a unique distribution of fatty acids which changed to varying degrees with age, and that, in the triacylglycerols, age had a greater effect on fatty acid content at sn-3 that at sn-1 or sn-2. Age-related changes in unsaturation were, however, greater in the phospholipids than in the triacylglycerols. Among the major phospholipids of L. lipoferus (phosphatidylcholine, phosphatidylinositol and phosphatidylethanolamine), changes in the proportion of unsaturated to saturated fatty acids, and in the number of double bonds per mole, were greater at sn-2 than at sn-1, except for phosphatidylinositol between 14 and 21 days of age. The pattern of acylation of phosphatidylinositol between 14 and 21 days was thus different from that of phosphatidylcholine and phosphatidylethanolamine. Furthermore, at the three ages investigated, phosphatidylinositol had low and relatively constant levels of unsaturation compared with phosphatidylcholine and phosphatidylethanolamine. The net decrease in phospholipid double bonds per mole in aging cells of L. lipoferus, and previous data, suggest that aging in this yeast is accompanied by a decrease in membrane fluidity.