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131.
Multidimensional heteronuclear NMR studies have been applied to the
resonance assignment and conformational analysis of 13C-enriched
Neu5Acalpha2-3Galbeta1-4Glc. It is demonstrated that three-dimensional
ROESY-HSQC experiments provide through-space distance restraints which
cannot be observed with conventional homonuclear 1H techniques due to
resonance overlap. In particular, connectivities demonstrating the
existence of the "anti" conformation about the Galbeta1-4Glc glycosidic
linkage are unambiguously observed. It is shown that 13C isotopic
enrichment of the trisaccharide at a level >95% enables straightforward
measurement of trans-glycosidic 1H-13C and 13C-13C coupling constants and a
Karplus-type relation is derived for the latter. In total 15 conformational
restraints were obtained for the trisaccharide in aqueous solution, all of
which were in excellent agreement with theoretical parameters computed from
a 5 ns molecular dynamics simulation of the glycan.
相似文献
132.
Molecular phylogenetics of Stenodermatini bat genera: congruence of data from nuclear and mitochondrial DNA 总被引:2,自引:1,他引:1
Van den Bussche RA; Baker RJ; Wichman HA; Hamilton MJ 《Molecular biology and evolution》1993,10(5):944-959
Within the tribe Stenodermatini the systematics of the complex of species
allied with the genus Artibeus has generated several alternative
phylogenetic hypotheses. The most recent treatment recognized four genera
(Artibeus, Dermanura, Enchisthenes, and Koopmania) and suggested that the
most recent common ancestor of these four genera would include the common
ancestor of all other currently recognized Stenodermatini genera except
Sturnira. To test this hypothesis, we examined an EcoRI-defined nuclear
satellite DNA repeat and 402 bp of DNA sequence variation from the
mitochondrial cytochrome b gene. Phylogenetic conclusions based on Southern
blot analyses, in situ hybridization, and mitochondrial DNA sequence data
indicate that Enchisthenes is not closely related to Dermanura, Artibeus,
or Koopmania and that Dermanura, Artibeus, and Koopmania shared a common
ancestor after diverging from the remainder of the Stenodermatini. If our
conclusions are correct, then justification for recognizing Dermanura and
Koopmania as generically distinct from Artibeus must be based on the
magnitude of difference that distinguishes each rather than on the
conclusion that to place them as congeneric with Artibeus creates a
paraphyletic taxon.
相似文献
133.
134.
135.
The phylogenetic origin of the bifunctional tyrosine-pathway protein in the enteric lineage of bacteria 总被引:5,自引:0,他引:5
Because bifunctional enzymes are distinctive and highly conserved products
of relatively infrequent gene-fusion events, they are particularly useful
markers to identify clusters of organisms at different hierarchical levels
of a phylogenetic tree. Within the subdivision of gram-negative bacteria
known as superfamily B, there are two distinctive types of tyrosine-pathway
dehydrogenases: (1) a broad- specificity dehydrogenase (recently termed
cyclohexadienyl dehydrogenase [CDH]) that can utilize either prephenate or
L-arogenate as alternative substrates and (2) a bifunctional CDH that also
posseses chorismate mutase activity. (T-proteins). The bifunctional
T-protein, thought to be encoded by fused ancestral genes for chorismate
mutase and CDH, was found to be present in enteric bacteria (Escherichia,
Shigella, Salmonella, Citrobacter, Klebsiella, Erwinia, Serratia,
Morganella, Cedecea, Kluyvera, Hafnia, Edwardsiella, Yersinia, and Proteus)
and in Aeromonas and Alteromonas. Outside of the latter "enteric lineage,"
the T-protein is absent in other major superfamily-B genera, such as
Pseudomonas (rRNA homology group I), Xanthomonas, Acinetobacter, and
Oceanospirillum. Hence, the T-protein must have evolved after the
divergence of the enteric and Oceanospirillum lineages.
3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase-phe, an early-pathway
isozyme sensitive to feedback inhibition by L- phenylalanine, has been
found in each member of the enteric lineage examined. The absence of both
the T-protein and DAHP synthase-phe elsewhere in superfamily B indicates
the emergence of these character states at approximately the same
evolutionary time.
相似文献
136.
Randa A Abusham RA Noor Zaliha Raja Rahman Abu Bakar Salleh Mahiran Basri 《Microbial cell factories》2009,8(1):20-9
Background
Many researchers have reported on the optimization of protease production; nevertheless, only a few have reported on the optimization of the production of organic solvent-tolerant proteases. Ironically, none has reported on thermostable organic solvent-tolerant protease to date. The aim of this study was to isolate the thermostable organic solvent-tolerant protease and identify the culture conditions which support its production. The bacteria of genus Bacillus are active producers of extra-cellular proteases, and the thermostability of enzyme production by Bacillus species has been well-studied by a number of researchers. In the present study, the Bacillus subtilis strain Rand was isolated from the contaminated soil found in Port Dickson, Malaysia. 相似文献137.
Hamerski L Bomm MD Silva DH Young MC Furlan M Eberlin MN Castro-Gamboa I Cavalheiro AJ da Silva Bolzani V 《Phytochemistry》2005,66(16):1927-1932
Phenylpropanoid glycosides, 1'-O-benzyl-alpha-L-rhamnopyranosyl-(1'-->6')-beta-D-glucopyranoside (1) and alpha-L-xylopyranosyl-(4'-->2')-(3-O-beta-D-glucopyranosyl)-1'-O-E-caffeoyl-beta-D-glucopyranoside (2), together with the known derivatives, 1,6-di-O-caffeoyl-beta-D-glucopyranoside (3), 1-O-(E)-caffeoyl-beta-D-glucopyranoside (4) and 1-O-(E)-feruloyl-beta-D-glucopyranoside (5), were isolated from leaves of Coussarea hydrangeifolia. Their structures were determined by IR, HRESIMS, and 1D and 2D NMR experiments, and their antioxidant activities, evaluated by assaying the free radical scavenging capacity using the DPPH (1,1-diphenyl-2-picrylhydrazyl) radical as substrate. The antioxidant activities of 3 and 4 (IC50 values of 15.0 and 19.2 microM, respectively) were comparable to that of the standard positive control caffeic acid, whilst 2 and 5 were only weakly active and 1 was inactive. 相似文献
138.
139.
The replicative helicase MCM recruits cohesin acetyltransferase ESCO2 to mediate centromeric sister chromatid cohesion 下载免费PDF全文
Miroslav P Ivanov Rene Ladurner Ina Poser Rebecca Beveridge Evelyn Rampler Otto Hudecz Maria Novatchkova Jean‐Karim Hériché Gordana Wutz Petra van der Lelij Emanuel Kreidl James RA Hutchins Heinz Axelsson‐Ekker Jan Ellenberg Anthony A Hyman Karl Mechtler Jan‐Michael Peters 《The EMBO journal》2018,37(15)
Chromosome segregation depends on sister chromatid cohesion which is established by cohesin during DNA replication. Cohesive cohesin complexes become acetylated to prevent their precocious release by WAPL before cells have reached mitosis. To obtain insight into how DNA replication, cohesion establishment and cohesin acetylation are coordinated, we analysed the interaction partners of 55 human proteins implicated in these processes by mass spectrometry. This proteomic screen revealed that on chromatin the cohesin acetyltransferase ESCO2 associates with the MCM2‐7 subcomplex of the replicative Cdc45‐MCM‐GINS helicase. The analysis of ESCO2 mutants defective in MCM binding indicates that these interactions are required for proper recruitment of ESCO2 to chromatin, cohesin acetylation during DNA replication, and centromeric cohesion. We propose that MCM binding enables ESCO2 to travel with replisomes to acetylate cohesive cohesin complexes in the vicinity of replication forks so that these complexes can be protected from precocious release by WAPL. Our results also indicate that ESCO1 and ESCO2 have distinct functions in maintaining cohesion between chromosome arms and centromeres, respectively. 相似文献
140.
Investigating the role of proteoglycans associated to cell membranes is fundamental to comprehend biochemical process that occurs at the level of membrane surfaces. In this paper, we exploit syndecan-4, a heparan sulfate proteoglycan obtained from cell cultures, in lipid Langmuir monolayers at the air-water interface. The monolayer served as a model for half a membrane, and the molecular interactions involved could be evaluated with tensiometry and vibrational spectroscopy techniques. Polarization-modulation infrared reflection-absorption spectroscopy (PM-IRRAS) employed in a constant surface pressure regime showed that the main chemical groups for syndecan-4 were present at the air-water interface. Subsequent monolayer decompression and compression showed surface pressure-area isotherms with a large expansion for the lipid monolayers interacting with the cell culture reported to over-express syndecan-4, which was also an indication that the proteoglycan was inserted in the lipid monolayer. The introduction of biological molecules with affinity for syndecam-4, such as growth factors, which present a key role in biochemical process of cell signaling, changed the surface properties of the hybrid film, leading to a model, by which the growth factor binds to the sulfate groups present in the heparan sulfate chains. The polypeptide moiety of syndecan-4 responds to this interaction changing its conformation, which leads to lipid film relaxation and further monolayer condensation. 相似文献