Histochemical and electron microscopic analysis of spiculogenesis in the demosponge Suberites domuncula.

The skeleton of demosponges is built of spicules consisting of biosilica. Using the primmorph system from Suberites domuncula, we demonstrate that silicatein, the biosilica-synthesizing enzyme, and silicase, the catabolic enzyme, are colocalized at the surface of growing spicules as well as in the axial filament located in the axial canal. It is assumed that these two enzymes are responsible for the deposition of biosilica. In search of additional potential structural molecules that might guide the mineralization process during spiculogenesis to species-specific spicules, electron microscopic studies with antibodies against galectin and silicatein were performed. These studies showed that silicatein forms a complex with galectin; the strings/bundles of this complex are intimately associated with the surface of the spicules and arranged concentrically around them. Collagen fibers are near the silactein/galectin complexes. The strings/bundles formed from silicatein/galectin display a lower degree of orientation than the collagen fibers arranged in a highly ordered pattern around the spicules. These data indicate that species-specific formation of spicules involves a network of (diffusible) regulatory factor(s) controlling enzymatic silica deposition; this mineralization process proceeds on a galectin/collagen organic matrix.     

Variation of butyrate production in the gut microbiome in type 2 diabetes patients

Background

Diabetes mellitus type 2 is a common disease that poses a challenge to the healthcare system. The disease is very often diagnosed late. A better understanding of the relationship between the gut microbiome and type 2 diabetes can support early detection and form an approach for therapies. Microbiome analysis offers a potential opportunity to find markers for this disease. Next-generation sequencing methods can be used to identify the bacteria present in the stool sample and to generate a microbiome profile through an analysis pipeline. Statistical analysis, e.g., using Student’s t-test, allows the identification of significant differences. The investigations are not only focused on single bacteria, but on the determination of a comprehensive profile. Also, the consideration of the functional microbiome is included in the analyses. The dataset is not from a clinical survey, but very extensive.

Results

By examining 946 microbiome profiles of diabetes mellitus type 2 sufferers (272) and healthy control persons (674), a large number of significant genera (25) are revealed. It is possible to identify a large profile for type 2 diabetes disease. Furthermore, it is shown that the diversity of bacteria per taxonomic level in the group of persons with diabetes mellitus type 2 is significantly reduced compared to a healthy control group. In addition, six pathways are determined to be significant for type 2 diabetes describing the fermentation to butyrate. These parameters tend to have high potential for disease detection.

Conclusions

With this investigation of the gut microbiome of persons with diabetes type 2 disease, we present significant bacteria and pathways characteristic of this disease.

     

Mercury,cadmium, zinc,copper and selenium in harbour porpoise (Phocoena phocoena) from West Greenland

Muscle, liver, kidney and skin samples taken from 78 harbour porpoises (Phocoena phocoena) were analysed for mercury, cadmium, zinc, copper and selenium. The highest concentrations of mercury were found in the liver (geometric mean 4.17 g/g wet weight), whilst the highest concentrations of cadmium were in the kidney (g.m. 13.2 g/g ww). The levels of cadmium were more than ten times higher than in harbour porpoises from the North Sea and the British NW coast, whilst the mercury levels were about the same. The importance of the cadmium content in the prey is discussed, but this attempt did not revealed the differences. Very high levels of zinc (g.m. 359 g/g ww) and selenium (g.m. 28.6 g/g ww) were found in skin samples, respectively seven and ten times more than in liver. A significant correlation was found between age and the level of mercury and cadmium in all organs. The concentration of mercury and selenium in liver and skin samples and of cadmium and zinc in kidney samples were highly correlated.     

Response of Cynodon dactylon to prolonged water deficits under saline conditions

Competition for available water resources in both arid and semi-arid locations has led to greater scrutiny of turfgrass irrigation. Irrigation management strategies, including deficit irrigation, need further investigation. The objective of this research was to determine the physiological response of bermudagrass (Cynodon dactylon (L.) Pers.) to prolonged water deficits under saline conditions. Bermudagrass was grown in large columns packed with three different soil types (sandy loam, silt loam and clay). Synthesized saline irrigation water was applied at three different salinity levels (1.5, 3.0 and 6.0 dS/m). Two previous experiments that were conducted with these columns over a 3.5 year period led to differential profile salinization in all 27 columns. At the end of this 3.5 year period, all irrigations were terminated and plant growth and water status were monitored over a 95 day dry-down period. Midday stomatal conductance, leaf water potential, canopy temperature, soil water in storage and stolon elongation were measured over the experimental period. On day 95, above ground tissue was harvested for dry weight and elemental tissue analysis. Midday stomatal conductance decreased around day 30 in all columns regardless of soil salinity. This decrease was not associated with a threshold leaf water potential, as midday leaf water potentials remained constant over a 60 day period. Stolon elongation also ceased before any deviation in the midday leaf water potential occurred. A concomitant reduction in evapo ranspiration was not associated with the measured decrease in stomatal conductance. This would suggest that bermudagrass may have regulated stomatal activity to compensate for lower conductances during periods of greater stress and/or that measured midday stomatal conductances cannot always be directly coupled to extended time evapotranspiration measurements.     

Effect of carbon sources and electron acceptors in the growth medium of Proteus spp. on the formation of (R)-2-hydroxycarboxylate viologen oxidoreductase and dimethylsulphoxide reductase

Proteus vulgaris and P. mirabilis were grown anaerobically on glucose in the absence or presence of dimethylsulphoxide (DMSO) as electron acceptor or on (S)- or (RS)-lactate in the presence of nitrogen (N)-oxides, sulphur (S)-oxides or pyruvate. During growth on glucose the main fermentation product was ethanol and in the presence of DMSO it was (R)-lactate. Growth on (RS)-lactate led to acetate and (R)-lactate and growth on (S)-lactate produced almost only acetate. Depending on the growth medium, in crude extracts of P. vulgaris the activities of (R)-2-hydroxycarboxylate viologen oxidoreductase (HVOR), measured as (R)-lactate dehydrogenase, and DMSO reductase were 0.5–8.0 and 0.3–1.1 units (U)/mg protein, respectively. Addition of nitrate to the growth medium diminished both enzyme activities to <0.1 U/mg protein. P. mirabilis showed also high HVOR activity when grown on (RS)-lactate in the presence of DMSO. Also, Clostridium homopropionicum contained 1.8 U/mg of a pyridine-nucleotide-independent reversible (R)-lactate dehydrogenase when tested with the electron acceptor 1,1-carbomoylmethylviologen (NH₂CO-MV). None of the organisms studied were significantly active with (S)-lactate and NH₂CO-MV. The possible physiological role of the HVOR may be as a dissimilatory (R)-lactate dehydrogenase. Correspondence to: H. Simon     

Estimating admixture pedigrees of recent hybrids without a contiguous reference genome

The genome of recently admixed individuals or hybrids has characteristic genetic patterns that can be used to learn about their recent admixture history. One of these are patterns of interancestry heterozygosity, which can be inferred from SNP data from either called genotypes or genotype likelihoods, without the need for information on genomic location. This makes them applicable to a wide range of data that are often used in evolutionary and conservation genomic studies, such as low-depth sequencing mapped to scaffolds and reduced representation sequencing. Here we implement maximum likelihood estimation of interancestry heterozygosity patterns using two complementary models. We furthermore develop apoh (Admixture Pedigrees of Hybrids), a software that uses estimates of paired ancestry proportions to detect recently admixed individuals or hybrids, and to suggest possible admixture pedigrees. It furthermore calculates several hybrid indices that make it easier to identify and rank possible admixture pedigrees that could give rise to the estimated patterns. We implemented apoh both as a command line tool and as a Graphical User Interface that allows the user to automatically and interactively explore, rank and visualize compatible recent admixture pedigrees, and calculate the different summary indices. We validate the performance of the method using admixed family trios from the 1000 Genomes Project. In addition, we show its applicability on identifying recent hybrids from RAD-seq data of Grant's gazelle (Nanger granti and Nanger petersii) and whole genome low-depth data of waterbuck (Kobus ellipsiprymnus) which shows complex admixture of up to four populations.     

Elektronenmikroskopische Untersuchungen an den Oralcirren und der Haut vonBranchiostoma lanceolatum

Praeoral tentacles and epidermis of the anterior body region ofBranchiostoma lanceolatum Pallas have been investigated by electron microscopy. The epidermis of the praeoral tentacles and the anterior body region are mono-layered and cohere by strong denticulations of the adjoining cell walls. Vertical secretory vesicles at the cell surface give off mucous substances. The secretory vesicles are found only in the body epithelium. Between epithelium cells both epithelia contain two different secondary sensilla types.B. lanceolatum is the lowest chordate in which taste buds of the praeoral tentacles have been found. The taste buds overtop the surface of the epithelium. The praeoral tentacles are stiffened by a skeleton rod, situated asymmetrically and build up in layers. The skeleton rod is surrounded by connective tissue, which includes a coelomic space. Axon bundles of different strength are situated in the connective tissue. Not only the taste buds but also singular sensilla types are innervated by these axon bundles. The relatively strong basement lamina is partially zonated and contains pores. An antagonistically arranged layer of collagen fibres of varying thickness occurs below the basement lamina.