Heterospecific CD4 help to rescue CD8 T cell killers

Help from CD4 T cells may be required for optimal generation and maintenance of memory CD8 T cells and also for optimal Ag reactivation. We examined whether the helper cell and the CD8 killer cell need to have the same Ag specificity for help to be effective during interactions of memory T cells with mature APC. This is important because virus and tumor Ag-specific CD4 T cell responses are selectively impaired in several chronic viral infections and malignancies. We performed studies in vitro and in vivo and found that functional memory CD4 T cells generated from a distinct antigenic source (heterospecific helpers) could provide direct and effective help to memory CD8 T cells. Functional heterospecific memory CD4 T cells could also rescue secondary CD8 T cell responses in an experimental tumor model in which homospecific CD4 help was impaired. This could provide a rationale for immunotherapy strategies designed to bypass impaired homospecific help.     

Divergence between Drosophila santomea and allopatric or sympatric populations of D. yakuba using paralogous amylase genes and migration scenarios along the Cameroon volcanic line

We have used two paralogous genes (Amyrel and Amy) of the amylase multigene family to reconstruct the phylogeny of the nine Drosophila melanogaster subgroup sister species, including D. santomea, the newly discovered endemic from São Tomé island. The evolutionary divergence of these genes is of special interest as it is suspected to result from physiological evolution via gene duplication. This paper describes the relationship between the geographical origin of the various strains and the patterns of mating and phylogeny, focusing on the evolution of D. santomea and its relationship to other species and their niches. The Amyrel and Amy data indicate that, contrary to expectations, the sympatric insular D. yakuba population is less closely related to D. santomea than allopatric mainland ones, suggesting that the extant insular D. yakuba population on São Tomé results from a recent secondary colonization. Data for sympatric and allopatric D. yakuba suggest that D. santomea arose from a mainland D. yakuba parental stock when montane habitats of the Cameroon volcanic line extended to lower altitudes during colder and less humid periods. Despite their different modes of evolution and different functions, the Amyrel and Amy genes provide remarkably consistent topologies and hence reflect the same history, that of the species.     

Evidence of a high rate of selective sweeps in African Drosophila melanogaster

Assessing the rate of evolution depends on our ability to detect selection at several genes simultaneously. We summarize DNA sequence variation data in three new and six previously published data sets from the left arm of the second chromosome of Drosophila melanogaster in a population from West Africa, the presumed area of origin of this species. Four loci [Acp26Aa, Fbp2, Vha68-1, and Su(H)] were previously found to deviate from a neutral mutation-drift equilibrium as a consequence of one or several selective sweeps. Polymorphism data from five loci from intervening regions (dpp, Acp26Ab, Acp29AB, GH10711, and Sos) did not show the characteristic deviation from neutrality caused by local selective sweeps. This genomic region is polymorphic for the In(2L)t inversion. Four loci located near inversion breakpoints [dpp, sos, GH10711, and Su(H)] showed significant structuring between the two arrangements or significant deviation from neutrality in the inverted class, probably as a result of a recent shift in inversion frequency. Overall, these patterns of variation suggest that the four selective events were independent. Six loci were observed with no a priori knowledge of selection, and independent selective sweeps were detected in three of them. This suggests that a large part of the D. melanogaster genome has experienced the effect of positive selection in its ancestral African range.     

Étude biostratigraphique et paléobotanique des gisements de calcaire blanc callovien au nord de poitiers

The white limestone represents a thick facies in the callovian stage of the threshold of Poitou. It makes the object of a detailed stratigraphical study which leads to its fauna and flora in the principal fossiliferous localities. The vertical range of Ammonites, layer by layer, leads to a chronostratigraphical subdivision in zones, subzones and shows up an important sedimentation break in the Upper Callovian in the axial region of the threshold of Poitou. Besides, a systematic study of plant remains gives original elements on the callovian flora in the West of France. These observations are completed by considerations of tectonic, sedimentary, paleographic and ecologic orders.     

How consistent is RAD‐seq divergence with DNA‐barcode based clustering in insects?

Promoted by the barcoding approach, mitochondrial DNA is more than ever used as a molecular marker to identify species boundaries. Yet, it has been repeatedly argued that it may be poorly suited for this purpose, especially in insects where mitochondria are often associated with invasive intracellular bacteria that may promote their introgression. Here, we inform this debate by assessing how divergent nuclear genomes can be when mitochondrial barcodes indicate very high proximity. To this end, we obtained RAD‐seq data from 92 barcode‐based species‐like units (operational taxonomic units [OTUs]) spanning four insect orders. In 100% of the cases, the observed median nuclear divergence was lower than 2%, a value that was recently estimated as one below which nuclear gene flow is not uncommon. These results suggest that although mitochondria may occasionally leak between species, this process is rare enough in insects to make DNA barcoding a reliable tool for clustering specimens into species‐like units.     

Inhibition of FGF receptor signalling in Xenopus oocytes: differential effect of Grb7, Grb10 and Grb14

The role of Grb7 adapters, Grb7, Grb10, and Grb14, was investigated in Xenopus oocytes expressing fibroblast growth factor receptors (FGFR). FGF-induced maturation of FGFR-expressing oocytes was blocked by previous injection of Grb7 or Grb14, but not Grb10. This effect correlated with Grb7/14 binding to the receptor, and inhibition of the Ras-dependent pathway. Interestingly, the phosphorylated insulin receptor interacting region (PIR) and Src 2 homology domains (SH2) of Grb7 and Grb14 were differently implicated in the inhibition of FGFR signalling. This study provided further evidence for specificity of the biological action of the Grb7 adapters on receptor tyrosine kinase signalling.     

Dinosaur track record on a shallow carbonate-dominated ramp (Loulle section, Late Jurassic, French Jura)

In 2006, sauropod and theropod trackways were discovered at the locality of Loulle in the French Jura Mountains. During the Late Oxfordian (sensu gallico), Loulle was located at the southeastern margin of the carbonate-dominated French Jura platform. The upper part of the section contains a 94-cm-thick dinosaur track-bearing interval. Dinosaur tracks were recorded in a tidal-flat setting punctuated by frequent flooding and emersion phases leading to desiccation, microbial mat development, and new sediment inputs. Four types of tracks were identified relative to their morphologies and the rheology of the tracked sediment. Tracks were recorded on sediment with different degrees of water saturation, covered with a thick, cohesive, and elastic microbial mat. This mat cover prevented tracks from erosion agents but also prevented the record of trackmaker anatomical details. Early lithification, probably driven by enhanced dolomitization, allowed the rapid fossilization of the tracks, protecting them from reworking during the subsequent dinosaur tracking phases. Sequential analysis reveals that the record of dinosaur tracks was made possible by a gain of accommodation at the scale of elementary (infra-Milankovitch) and small-scale (100 kyr) sequences. The loss of accommodation observed at the scale of medium-scale (400 kyr) and very small scale (20 kyr) sequences enhanced the ramp progradation at the Bimammatum-Planula boundary, allowing dinosaurs to walk on the Loulle tidal-flat, along a narrow ENE/WSW isthmus.