Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes

TAR DNA-binding protein 43 (TDP-43) is associated with a spectrum of neurodegenerative diseases. Although TDP-43 resembles heterogeneous nuclear ribonucleoproteins, its RNA targets and physiological protein partners remain unknown. Here we identify RNA targets of TDP-43 from cortical neurons by RNA immunoprecipitation followed by deep sequencing (RIP-seq). The canonical TDP-43 binding site (TG)(n) is 55.1-fold enriched, and moreover, a variant with adenine in the middle, (TG)(n)TA(TG)(m), is highly abundant among reads in our TDP-43 RIP-seq library. TDP-43 RNA targets can be divided into three different groups: those primarily binding in introns, in exons, and across both introns and exons. TDP-43 RNA targets are particularly enriched for Gene Ontology terms related to synaptic function, RNA metabolism, and neuronal development. Furthermore, TDP-43 binds to a number of RNAs encoding for proteins implicated in neurodegeneration, including TDP-43 itself, FUS/TLS, progranulin, Tau, and ataxin 1 and -2. We also identify 25 proteins that co-purify with TDP-43 from rodent brain nuclear extracts. Prominent among them are nuclear proteins involved in pre-mRNA splicing and RNA stability and transport. Also notable are two neuron-enriched proteins, methyl CpG-binding protein 2 and polypyrimidine tract-binding protein 2 (PTBP2). A PTBP2 consensus RNA binding motif is enriched in the TDP-43 RIP-seq library, suggesting that PTBP2 may co-regulate TDP-43 RNA targets. This work thus reveals the protein and RNA components of the TDP-43-containing ribonucleoprotein complexes and provides a framework for understanding how dysregulation of TDP-43 in RNA metabolism contributes to neurodegeneration.     

Dominance complementation of Hd1 and Ghd8 contributes to extremely late flowering in two rice hybrids

Molecular Breeding - Lack of seed dormancy, a major cause of pre-harvest sprouting in rice and other cereal crops, causes significant reductions in grain yield and quality. Weedy rice is often...     

ROS在植物激素信号转导中的作用（综述）

植物能感受外界环境信息的刺激,并通过复杂的信号转导体系调节植物特定基因的表达,引起相应的生理生化反应,以适应不断变化的环境条件.研究表明,活性氧作为第二信使参与了植物激素信号转导,本文对其在植物激素信号转导中的作用进行综述.     

不同氮源对苦草(Vallisneria natans)生长及生理指标的影响

通过实验室静态模拟,研究了在富营养条件下(4.0 mg.L-1TN,0.2 mg.L-1TP)不同比例铵态氮和硝态氮(6∶0、5∶1、3∶3、1∶5和0∶6)对苦草〔Vallisneria natans(Lour.)Hara〕的生长与生理指标的影响。结果表明,随着铵态氮和硝态氮比例的下降,苦草相对生长率和蛋白质含量先升高后下降,超氧化物歧化酶(SOD)和谷氨酰胺合成酶(GS)活性逐渐下降,硝酸还原酶(NR)活性逐渐升高。在4.0 mg.L-1TN和0.2 mg.L-1TP条件下,若不考虑磷的作用,高浓度铵态氮对苦草的生理功能有影响,对其生长有明显的抑制作用;而当铵态氮浓度小于0.67 mg.L-1时却可以促进苦草的生长。     

不同浓度IBA、NAA对紫萼龙吐珠扦插生根的影响

以紫萼龙吐珠Clerodendrum speciosum为试材,采用单因素完全随机设计,研究不同浓度IBA、NAA混合溶液对紫萼龙吐珠扦插生根的影响。结果表明,当NAA为50 mg·L-1,IBA为150或200 mg·L-1时,紫萼龙吐珠插穗成活率和生根率最高,可达100%;根系数量、根长最大值分别是对照组的9.4倍和4.9倍;当NAA、IBA分别为50、150 mg·L-1时,根系效果指数在9、11月均较高,最高可达6.42。运用隶属函数法对9、11月扦插各处理组合的生根效果进行综合评价,认为NAA 50 mg·L-1、IBA 150或200 mg·L-1混合溶液处理紫萼龙吐珠插条均最有利于生根,可得到较高的生根质量。     

Pristine C60 Fullerene Nanoparticles Ameliorate Hyperglycemia-Induced Disturbances via Modulation of Apoptosis and Autophagy Flux

Neurochemical Research - Diabetes mellitus is a prevalent metabolic disorder associated with multiple complications including neuropathy, memory loss and cognitive decline. Despite a long history...     

益智不同组织多糖含量及其生物合成途径分析

为了解益智（Alpinia oxyphylla）多糖生物合成途径关键酶功能,对其茎、叶、果实中的多糖含量及其单糖组成进行了研究,并采用Real-Time qPCR分析了益智多糖生物合成关键酶基因的表达模式。结果表明,益智多糖含量依次为果实 > 叶 > 茎,主要由葡萄糖、木糖、甘露糖、半乳糖和阿拉伯糖组成;利用益智转录组数据共获得47 690条unigenes,其中31 892条在NR、Swiss-Prot、KEGG、COG、KOG、GO和Pfam数据库获得注释,其中208个unigenes参与益智多糖的生物合成,涉及15个酶。表达分析表明,所筛选的18个基因在茎、叶、果实中均有表达,14个基因在果实中的表达量最高,以糖基转移酶基因和UDP-葡萄糖焦磷酸化酶基因的表达量最高,且其表达模式与不同组织中葡萄糖含量的变化一致。     

Evolution of specialized microbial cooperation in dynamic fluids

Here, we study the evolution of specialization using realistic computer simulations of bacteria that secrete two public goods in a dynamic fluid. Through this first‐principles approach, we find physical factors such as diffusion, flow patterns and decay rates are as influential as fitness economics in governing the evolution of community structure, to the extent that when mechanical factors are taken into account, (a) generalist communities can resist becoming specialists despite the invasion fitness of specialization; (b) generalist and specialists can both resist cheaters despite the invasion fitness of free‐riding; and (c) multiple community structures can coexist despite the opposing force of competitive exclusion. Our results emphasize the role of spatial assortment and physical forces on niche partitioning and the evolution of diverse community structures.     

Early Mixed Farming of Millet and Rice 7800 Years Ago in the Middle Yellow River Region,China

The Peiligang Culture (9000-7000 cal. yr BP) in the Middle Yellow River region, North China, has long been considered representative of millet farming. It is still unclear, however, if broomcorn millet or foxtail millet was the first species domesticated during the Peiligang Culture. Furthermore, it is also unknown whether millet was cultivated singly or together with rice at the same period. In this study, phytolith analysis of samples from the Tanghu archaeological site reveals early crop information in the Middle Yellow River region, China. Our results show that broomcorn millet was the early dry farming species in the Peiligang Culture at 7800 cal. yr BP, while rice cultivation took place from 7800 to 4500 cal. yr BP. Our data provide new evidence of broomcorn millet and rice mixed farming at 7800 cal. yr BP in the Middle Yellow River region, which has implications for understanding the domestication process of the two crops, and the formation and continuance of the Ancient Yellow River Civilization.