Agrobacterium radiobacter strains K84, K1026 and K84 Agr‐ produce an antibiotic‐like substance,active in vitro against A. tumefaciens and phytopathogenic Erwinia and Pseudomonas spp.

Agrobacterium radiobacter strains K84, K1026 and K84 Agr^‐ produced in vitro an antibiotic‐like substance (ALS 84), different from agrocin 84 and observed in mannitol‐glutamate medium. Twenty five out of 39 A. tumefaciens strains of biovars 1, 2 and 3 were sensitive to ALS 84 regardless of their sensitivity to agrocin 84. Sensitivity in A. tumefaciens strain C58 was not encoded by the Ti‐plasmid. Most isolates tested of Erwinia carotovora subsp. carotovora E. carotovora subsp. atroseptica, Pseudomonas corrugata P. cichorii and unidentified isolates from galls were also sensitive to this substance. ALS 84 was not affected by the proteases studied, nor by treatment at 62°C for 30 min and had a bacteriostatic effect. The production of ALS 84 might play a role in the complex mechanism of biological control of crown gall, especially in strains resistant to agrocin 84 and sensitive to ALS 84, and by the creation of an ecological niche favourable to A. radiobacter strains K84, K1026 or K84 Agr^‐.     

紫貂冬季食性的分析

１９９１至１９９８年的三个冬季,在大兴安岭地区共收集紫貂粪样２２３个．食性分析结果表明,紫貂冬季食物主要为小型哺乳类（５４．１％）、植物浆果和种子（３２．４％）、鸟类（１２．５％）和昆虫（１．０％）．在紫貂选择的７种小型哺乳类中,主要以棕背（２７．３％）和红背（１９．２％）为食,其次为雪兔和冬眠的花鼠。对于鸟类,紫貂主要捕食花尾榛鸡（８．１％）,松鸦（０．７％）,大山雀（０．５％）和黑啄本鸟等。有２．２％的粪样中含有小型鸟的卵壳、紫貂的植物性食物主要为越桔浆果（２０．８％）和偃松种籽（８．８％）。昆虫中只有蚂蚁在紫貂食性中出现（１．０％）．紫貂冬季食物构成没有年度间差异（Ｐ＞０．０５）。通过捕食迹,我们还发现紫貂捕食黑嘴松鸡。虽然红背的捕获率（７９．４％）高于棕背（２．９％）,但食性分析结果却相反,说明紫貂更喜欢捕捉身体较大的鼠类。有较强气味的中虽有一定的数量,但在紫貂冬季食物中未出现过。     

Searching the conformational complexity and binding properties of HDAC6 through docking and molecular dynamic simulations

Histone deacetylases (HDACs) are a family of proteins involved in the deacetylation of histones and other non-histones substrates. HDAC6 belongs to class II and shares similar biological functions with others of its class. Nevertheless, its three-dimensional structure that involves the catalytic site remains unknown for exploring the ligand recognition properties. Therefore, in this contribution, homology modeling, 100-ns-long Molecular Dynamics (MD) simulation and docking calculations were combined to explore the conformational complexity and binding properties of the catalytic domain 2 from HDAC6 (DD2-HDAC6), for which activity and affinity toward five different ligands have been reported. Clustering analysis allowed identifying the most populated conformers present during the MD simulation, which were used as starting models to perform docking calculations with five DD2-HDAC6 inhibitors: Cay10603 (CAY), Rocilinostat (RCT), Tubastatin A (TBA), Tubacin (TBC), and Nexturastat (NXT), and then were also submitted to 100-ns-long MD simulations. Docking calculations revealed that the five inhibitors bind at the DD2-HDAC6 binding site with the lowest binding free energy, the same binding mode is maintained along the 100-ns-long MD simulations. Overall, our results provide structural information about the molecular flexibility of apo and holo DD2-HDAC6 states as well as insight of the map of interactions between DD2-HDAC6 and five well-known DD2-HDAC6 inhibitors allowing structural details to guide the drug design. Finally, we highlight the importance of combining different theoretical approaches to provide suitable structural models for structure-based drug design.     

胶陀螺的光敏活性组分

用石油醚、氯仿、乙酸乙酯和丙酮对胶陀螺子实体进行梯度提取,得到的粗提物做光敏活性药理试验,结果表明:胶陀螺的氯仿和乙酸乙酯粗提取物有明显的光敏活性。将氯仿和乙酸乙酯的粗提物分别用不同比例的氯仿—甲醇进行反复柱层析,同时配合光敏活性药理试验,得到6个有光敏活性的组分,分别为c2、c3、c4、c5、c6和c11。将6个组分合并后继续分离,最终得到1个有橙黄色荧光点的成分,对其进行光敏活性药理试验,结果证明其为胶陀螺的光敏活性成分。     

Comparative evaluation of autofocus algorithms for a real-time system for automatic detection of Mycobacterium tuberculosis

Microscopy images must be acquired at the optimal focal plane for the objects of interest in a scene. Although manual focusing is a standard task for a trained observer, automatic systems often fail to properly find the focal plane under different microscope imaging modalities such as bright field microscopy or phase contrast microscopy. This article assesses several autofocus algorithms applied in the study of fluorescence-labeled tuberculosis bacteria. The goal of this work was to find the optimal algorithm in order to build an automatic real-time system for diagnosing sputum smear samples, where both accuracy and computational time are important. We analyzed 13 focusing methods, ranging from well-known algorithms to the most recently proposed functions. We took into consideration criteria that are inherent to the autofocus function, such as accuracy, computational cost, and robustness to noise and to illumination changes. We also analyzed the additional benefit provided by preprocessing techniques based on morphological operators and image projection profiling.     

The freshwater planarian Dugesia (G.) tigrina contains a great diversity of homeobox genes

To identify potential pattern control and cell determination and/or differentiation genes in the freshwater planarian Dugesial (G.) tigrina, we searched for homeobox genes of different types in the genome of this primitive metazoan. We applied two basic approaches: 1) Screening the cDNA library with degenerate oligonucleotides corresponding to the most conserved amino acid sequence from helix-3 of the homeodomain of each family; and 2) PCR amplification of genomic DNA or cDNA, using two sets of degenerated oligonucleotides corresponding to helices 1 and 3 of the homeodomain or two specific domains of the POU family. Using the first strategy we have identified and characterized two tissue-specific cell determination and/or differentiation NK-type homeobox genes. Using the second strategy we have identified several homeobox genes that belong to the HOM/Hox, paired (prd) or POU families.     

辣椒温和斑点病毒(PMMV)外壳蛋白基因的克隆和序列测定

从本院分离的辣椒温和斑点病毒株系PMMV-QD中提取RNA.根据已有报道的外壳蛋白(CP)自行设计引物P1、P2,用RT-PCR扩增PMMV-QD的CP基因的cDNA,插入pMD 18-T载体,转化感受态受体菌XL1-B1ue,以蓝白菌落筛选转化株,用PCR检测白色菌落,确认获得了含cDNA的阳性重组子.序列测定和比较的结果表明该片段确含有PMMV的CP基因编码区,此种cDNA与国外报道的PMMV病毒株系核苷酸序列的同源性达到97.7%.     

实时荧光定量PCR技术在转基因食品检测领域中的应用

随着基因工程技术在农业生产中应用的深入,越来越多具有改良特征的转基因植物在全球范围内得到广泛种植,随之而来的转基因食品也迅猛发展,转基因产品大规模商业化引起了对安全性问题的担忧。为保证转基因产品标签制度的顺利实施,建立快速、准确、高通量的定量检测方法十分必要。我们综述了国内外转基因食品检测技术的研究进展,重点阐述了实时荧光定量PCR技术在转基因食品检测领域中的应用,并展望了通过构建质粒标准分子的方法来实现对更多转基因植物品系的定量检测。