Validation of Housekeeping Genes in the Brains of Rats Submitted to Chronic Intermittent Hypoxia,a Sleep Apnea Model

Obstructive sleep apnea (OSA) is a syndrome characterized by intermittent nocturnal hypoxia, sleep fragmentation, hypercapnia and respiratory effort, and it has been associated with several complications, such as diabetes, hypertension and obesity. Quantitative real-time PCR has been performed in previous OSA-related studies; however, these studies were not validated using proper reference genes. We have examined the effects of chronic intermittent hypoxia (CIH), which is an experimental model mainly of cardiovascular consequences of OSA, on reference genes, including beta-actin, beta-2-microglobulin, glyceraldehyde-3-phosphate dehydrogenase, hypoxanthine guanine phosphoribosyl transferase and eukaryotic 18S rRNA, in different areas of the brain. All stability analyses were performed using the geNorm, Normfinder and BestKeeper software programs. With exception of the 18S rRNA, all of the evaluated genes were shown to be stable following CIH exposure. However, gene stability rankings were dependent on the area of the brain that was analyzed and varied according to the software that was used. This study demonstrated that CIH affects various brain structures differently. With the exception of the 18S rRNA, all of the tested genes are suitable for use as housekeeping genes in expression analyses.     

Protein electrophoresis in Andean condors (Vultur gryphus): Reference values and differences between wild and rehabilitating individuals

The study of wildlife health greatly contributes to understanding population dynamics and detecting conservation threats. The determination of the different fractions of plasma proteins (proteinogram) is an important laboratory tool to study wildlife health. The aim of this study was to characterize protein electrophoresis in wild Andean condors (Vultur gryphus) from north‐western Patagonia and to evaluate differences according to age and sex classes. Once reference values of wild, apparently healthy individuals, were established, we compared these values to those of individuals received at the Buenos Aires Zoo in Argentina for rehabilitation due to various health problems. Reference proteinograms from wild Andean condors differed only in the α 1 and β 2‐fractions between sex categories. Males showed higher concentrations of these protein fractions than females. We found clear differences between wild birds and rehabilitating individuals. Total proteins, globulins, α 1‐globulins, total α‐globulins, β 2‐globulins, total β‐globulins, and γ‐globulins were significantly higher in rehabilitating than in wild individuals, whereas albumin, α 2, and β1‐globulins were similar between these groups. The albumin/globulin ratio, as a general indicator of health, was significantly lower in rehabilitating than in wild individuals. The results indicate the effects on different protein fractions of pathologic processes occurring in individuals undergoing rehabilitation. Our results provide useful insights, contributing to improving diagnoses and prognoses in this species. This information may also be useful to assess the health status of Andean condors in studies of wild populations and for comparisons with other bird species.     

Heteroaromatic-aminomethyl quinolones: potent and selective iNOS inhibitors

The overproduction of nitric oxide during the biological response to inflammation by the nitric oxide synthase (NOS) enzymes have been implicated in the pathology of many diseases. By removal of the amide core from uHTS-derived quinolone 4, a new series highly potent heteroaromatic-aminomethyl quinolone iNOS inhibitors 8 were identified. SAR studies led to identification of piperazine 22 and pyrimidine 32, both of which reduced plasma nitrates following oral dosing in a mouse lipopolysaccharide challenge assay.     

Fish Biodiversity of the Vitória-Trindade Seamount Chain,Southwestern Atlantic: An Updated Database

Despite a strong increase in research on seamounts and oceanic islands ecology and biogeography, many basic aspects of their biodiversity are still unknown. In the southwestern Atlantic, the Vitória-Trindade Seamount Chain (VTC) extends ca. 1,200 km offshore the Brazilian continental shelf, from the Vitória seamount to the oceanic islands of Trindade and Martin Vaz. For a long time, most of the biological information available regarded its islands. Our study presents and analyzes an extensive database on the VTC fish biodiversity, built on data compiled from literature and recent scientific expeditions that assessed both shallow to mesophotic environments. A total of 273 species were recorded, 211 of which occur on seamounts and 173 at the islands. New records for seamounts or islands include 191 reef fish species and 64 depth range extensions. The structure of fish assemblages was similar between islands and seamounts, not differing in species geographic distribution, trophic composition, or spawning strategies. Main differences were related to endemism, higher at the islands, and to the number of endangered species, higher at the seamounts. Since unregulated fishing activities are common in the region, and mining activities are expected to drastically increase in the near future (carbonates on seamount summits and metals on slopes), this unique biodiversity needs urgent attention and management.     

Real-time PCR improves Helicobacter pylori detection in patients with peptic ulcer bleeding

Background and Aims

Histological and rapid urease tests to detect H. pylori in biopsy specimens obtained during peptic ulcer bleeding episodes (PUB) often produce false-negative results. We aimed to examine whether immunohistochemistry and real-time PCR can improve the sensitivity of these biopsies.

Patients and Methods

We selected 52 histology-negative formalin-fixed paraffin-embedded biopsy specimens obtained during PUB episodes. Additional tests showed 10 were true negatives and 42 were false negatives. We also selected 17 histology-positive biopsy specimens obtained during PUB to use as controls. We performed immunohistochemistry staining and real-time PCR for 16S rRNA, ureA, and 23S rRNA for H. pylori genes on all specimens.

Results

All controls were positive for H. pylori on all PCR assays and immunohistochemical staining. Regarding the 52 initially negative biopsies, all PCR tests were significantly more sensitive than immunohistochemical staining (p<0.01). Sensitivity and specificity were 55% and 80% for 16S rRNA PCR, 43% and 90% for ureA PCR, 41% and 80% for 23S rRNA PCR, and 7% and 100% for immunohistochemical staining, respectively. Combined analysis of PCR assays for two genes were significantly more sensitive than ureA or 23S rRNA PCR tests alone (p<0.05) and marginally better than 16S rRNA PCR alone. The best combination was 16S rRNA+ureA, with a sensitivity of 64% and a specificity of 80%.

Conclusions

Real-time PCR improves the detection of H. pylori infection in histology-negative formalin-fixed paraffin-embedded biopsy samples obtained during PUB episodes. The low reported prevalence of H. pylori in PUB may be due to the failure of conventional tests to detect infection.     

In vitro meristem culture of M.4 apple (Malus pumila Mill.). I. Optimal nutrient medium

Shoot tips of M.4 apple clone were excised from actively growing one year-old stoolbed branches, and cultured in order to determine the optimal nutrient medium for each stage of their in vitro culture. The basal medium (BM) used was that described by Murashige and Skoog, supplemented with vitamins, glycine, myoinositol, sucrose, with or without agar, and different combinations of plant growth regulators. Best media for each stage were: BM+0.5 mg 1^-1 indole-3yl-butyric acid (IBA)+0.5 mg 1^-1 6-benzylaminopurine (BAP) for explant establishment (Stage I); BM+0.1 mg 1^-1 IBA+1.0 mg 1^-1 BAP for multiplication and internode enlargement (Stage II); and 2.0 mg 1^-1 IBA+0.1 mg 1^-1 BAP without agar for the rooting of the plantlets (Stage III).     

Periodicity and environmental drivers of apical and lateral growth in a Cerrado woody species

Key message

Apical and lateral growth are seasonal in a Cerrado species, and these events are related to each other and linked with climatic and environmental features.

Abstract

In the Cerrado, a tropical ecosystem with seasonal rainfall, we investigated the timing of leaf production and cambial activity, and checked whether these features are related to each other and with climatic and environmental factors. Between September 2011 and December 2012, sampling of main stem and vegetative phenological observations of Kielmeyera grandiflora (Wawra) Saddi (Calophyllaceae) were done monthly to assess seasonality in leaf production and cambial activity, and to compare these features with each other. To check the relationship of bud opening and the onset of cambial activity with climatic and environmental features, the average temperature and day length, and the precipitation sum in a time window ranging from 1 to 30 days before the occurrence of these events were recorded, and the coefficient of variation was calculated. Leaf production and cambial activity were seasonal. Bud opening occurred in September 2011 and August 2012, during the dry season. The onset of cambial activity occurred in October both in 2011 and 2012, 1–2 months after bud opening, at the beginning of the rainy season. The cambium was dormant in May, during the rainy season. Photoperiod and temperature showed low coefficients of variation in the time window before bud opening and onset of cambial activity, while rainfall presented a high coefficient of variation. Thus, both apical and lateral growth are seasonal events in Cerrado species, and are related to each other. A set of climatic and environmental features is related with seasonal growth, among which photoperiod and temperature may be important in the regulation of these events.

     

Diversity and colonization of arbuscular mycorrhizal fungi in the tree fern Alsophila firma in rainy and dry season

Alsophila firma is a deciduous tree fern considered as an emblematic species of Mexican tropical montane cloud forest (TMCF). We studied spores diversity, structure and colonization by arbuscular mycorrhizal fungi (AMF) within the roots of the Alsophila firma in rainy and dry season. Eighteen species of the genera Acaulospora (5), Gigaspora (4), Glomus (4), Funneliformis (2), Sclerocystis (2) and Scutellospora (1) were identified. The species F. constrictum, F. geosporum, Gigaspora albida, G. decipiens, Glomus microaggregatum and Sclerocystis coremioides are reported for the first time in TMCF. The dominant genera were Funneliformis and Acaulospora. In rainy season, a higher richness (H′ t_0.005(2)9?=?4.78) and evenness (E) of AMF spores was recorded, compared to the dry season. However, the degree of colonization was statistically significant higher in the dry season. This study is the first to estimate the species richness of AMF associated with the rhizosphere of a fern in Mexico as well as for A. firma.     

Mating Behavior and Basic Biology of <Emphasis Type="Italic">Haywardina cuculi</Emphasis><Emphasis Type="Bold">(</Emphasis>Diptera: Tephritidae), a Poorly Known Species Exhibiting High Variability in Copulation Duration

The natural history and mating behavior of a species of tephritid fruit fly in the poorly studied genus Haywardina are described for the first time. Haywardina cuculi Hendel larvae were recovered over four field seasons from infested fruit of Vassobia breviflora (Sendtn.) Hunz, which constitutes a new host plant record for this species. Recovered pupae emerged as adults over 183 days on average, suggesting that most individuals became dormant. Adult flies engaged in sexual activity as soon as two days after emergence, were highly promiscuous, and displayed large variability in copulation duration. As for most tephritid species in the subtribe Carpomyini, H. cuculi exhibited a resource defense mating system. Fly activity peaked around noon. Copulation could last from 9 min to 17 h, with most copulations beginning in the afternoon and lasting until the following day. We discuss the potential significance of copulation duration variability in light of mate guarding and sperm competition hypothesis and outline future research to understand the evolution of life history and these behavioral strategies.