Genetic analysis of the effect of zinc deficiency on Arabidopsis growth and mineral concentrations

Aims

Zinc deficiency is a common micronutrient deficiency in plants growing in many different regions of the world and is associated with disturbances in uptake and accumulation of mineral nutrients. Despite many published data on physiological factors affecting ion accumulation in Zn deficient plants, there is very little information about the genetic factors underlying this. We aim to identify genetic loci involved in mineral accumulation and plant performance under Zn deficiency.

Methods

Genetic loci were identified using the genetically segregating Ler × Cvi recombinant inbred line (RIL) population grown under Zn deficient conditions. Lines were analysed for the concentrations of Zn, Fe, Mn, K, Ca, Mg, P, Cu, S and Al in shoot dry matter. The same was done for the same lines grown under Zn sufficient conditions.

Results

We found considerable heritable variation for most mineral concentrations. In general, there was a positive correlation between mineral concentrations. For Zn only condition-dependent QTLs were identified, while for most other mineral concentrations both condition-dependent and -independent QTLs were identified. Several QTLs co-localize, including co-localization to loci controlling shoot biomass and to mineral concentration loci found previously in this and other RIL populations.

Conclusions

There are different genetic loci controlling Zn accumulation under deficient and sufficient Zn supply. Only for few minerals, their accumulation is controlled by Zn-supply-specific loci.     

The case of an infertile male with an uncommon reciprocal X-autosomal translocation: how does this affect male fertility?

Infertility is defined as the inability to conceive after one year of regular unprotected intercourse. Constitutional numerical and/or structural chromosomal aberrations like sex-chromosome aberrations are one of the possible factors involved in fertility problems. Reciprocal translocations between an X-chromosome and an autosome are rarely seen in men. Male carriers of an X-autosome translocation are invariably sterile, regardless of the position of the breakpoint in the X-chromosome. Breakpoints in autosomal chromosomes could also be involved in male infertility. In this paper, we describe a 31-year-old male with azoospermia. GTG banding with high resolution multicolor-banding (MCB) techniques revealed a karyotype 46,Y,t(X;1)(p22.3;q25), and we discuss how the breakpoint of this translocation could affect male infertility. As a conclusion, cytogenetic evaluation of infertile subjects with azoospermia should be considered in the first place before in vitro fertilisation procedures are planned.     

The effect of 8 week pilates exercise on body composition in obese women

The objective of this study was to explore the effects of 8-weeks modern pilates mat and ball exercise program on body mass, waist circumference and waist to hip ratio on sedentary obese women total of 58 health sedentary obese women volunteered to participate in this study. They were divided randomly into 1 of 2 groups: pilates training group (PTG; N = 34) and control group (CG; N = 27). A pilates training program was applied to the subjects one hour per day four days per week during 8 weeks. The subjects in the control group did not participate in the training and participated only in the pre and post test measurements. BMI, waist circumference, Waist-hip ratio, 4-site skinfold thickness (Biceps, Triceps, Supscapula and Iliac), fat percentage, resting metabolic rate, Lean body mass and flexibility were assessed before and after the pilates training program. The SPSS statistical program (version 16.0) was used for data analysis. Analyses of covariance (ANCOVAs) were run on each of the dependent variables. For all analyses, the criterion for significance was set at an alpha level of p < 0.05. 8 weeks of pilates training program has been found to be effective on weight, Body mass index, Lean body mass, waist-hip ratio, biceps, triceps, fat percentage, basal metabolic rate, and flexibility in PTG (p < 0.05). The control group showed no significant differences in the same measures post-intervention. As a result there was a positive effect of Modern Pilates mat and ball exercises of reducing obesity, body composition parameters and flexibility at sedentary obese women.     

Nickel-enriched seed and externally supplied nickel improve growth and alleviate foliar urea damage in soybean

Background and aims

The importance of seed Ni reserves for plant growth and N metabolism is poorly understood. This study investigated the effects of both seed Ni and externally supplied Ni on the impact of foliarly-applied urea and N-nutritional status of soybean.

Methods

Soybean seeds were produced by growing plants in nutrient solutions containing different Ni levels, and their urease activities were measured. Plants were then grown from these seeds with or without external Ni. After treating half of the plants with foliar urea, the urea damage symptoms, elongation rates and chlorophyll concentrations were followed over one week. Biomass and mineral concentrations of different plant parts were determined.

Results

Nickel supply at increasing rates improved seed yield by up to 25 %. Seeds with Ni concentrations varying between 0.04–8.32 mg.kg^?1 were obtained. Depending on the Ni concentration, the seed urease activities differed up to 100-fold. Leaf damage due to foliar urea spray was significantly alleviated by higher seed Ni as well as external Ni supply. Higher Ni also promoted shoot elongation and improved chlorophyll concentrations. Nickel was 10-times more concentrated in the youngest part than in older leaves. In the absence of foliar urea, Ni enhanced the N concentration of the growing part of the shoot by up to 30 %.

Conclusion

A better utilization of foliarly-applied urea-N is achieved in soybean when adequate Ni is supplied to plants by seed reserves and/or externally. High seed Ni levels are also required for preventing foliar urea damage and improving N remobilization.     

Phytosiderophore release by wheat genotypes differing in zinc deficiency tolerance grown with Zn-free nutrient solution as affected by salinity

There is limited information concerning the effect of salinity on phytosiderophores exudation from wheat roots. The aim of this hydroponic experiment was to investigate the effect of salinity on phytosiderophore release by roots of three bread wheat genotypes differing in Zn efficiency (Triticum aestivum L. cvs. Rushan, Kavir, and Cross) under Zn deficiency conditions. Wheat seedlings were transferred to Zn-free nutrient solutions and exposed to three salinity levels (0, 60, and 120 mM NaCl). The results indicated that Cross and Rushan genotypes exuded more phytosiderophore than did the Kavir genotype. Our findings suggest that the adaptive capacity of Zn-efficient ‘Cross’ and ‘Rushan’ wheat genotypes to Zn deficiency is due partly to the higher amounts of phytosiderophore release. Only 15 days of Zn deficiency stress was sufficient to distinguish between Zn-efficient (Rushan and Cross) and Zn-inefficient (Kavir) genotypes, with the former genotypes exuding more phytosiderophore than the latter. Higher phytosiderophore exudation under Zn deficiency conditions was accompanied by greater Fe transport from root to shoot. The maximum amount of phytosiderophore was exuded at the third week in ‘Cross’ and at the fourth week in ‘Kavir’ and ‘Rushan’. For all three wheat genotypes, salinity stress resulted in higher amounts of phytosiderophore exuded by the roots. In general, for ‘Kavir’, the largest amount of phytosiderophore was exuded from the roots at the highest salinity level (120 mM NaCl), while for ‘Cross’ and ‘Rushan’, no significant difference was found in phytosiderophore exudation between the 60 and 120 mM NaCl treatments. More investigation is needed to fully understand the physiology of elevated phytosiderophore release by Zn-deficient wheat plants under salinity conditions.     

Statins inhibit growth of human endometrial stromal cells independently of cholesterol availability

Endometriosis is characterized by ectopic growth of endometrial tissues. Statins, inhibitors of 3-hydroxy-3methylglutaryl-coenzyme A reductase (HMGCR), have been shown to decrease proliferation of several mesenchymal tissues. Actions of statins may be related to decreased availability of cholesterol as well as intermediate metabolites of the mevalonate pathway downstream of HMGCR. This study was designed to evaluate effects of statins on growth of endometrial stromal cells and to investigate mechanisms of these effects. Human endometrial stromal cells were cultured in the absence and in the presence of serum and with or without mevastatin and simvastatin. DNA synthesis and viable cell numbers were determined. Effects of statins were also evaluated in the presence of mevalonate and squalene. Furthermore, effects on phosphorylation of mitogen-activated protein kinase 3/1 (MAPK3/1) (also known as extracellular signal-regulated kinase [ERK1/2]) were determined. Mevastatin and simvastatin induced a concentration-dependent inhibition of DNA synthesis and viable cell count in chemically defined media and in the presence of serum. Mevalonate, but not squalene, abrogated inhibitory effects of statins on cell proliferation. Statins inhibited MAPK3/1 phosphorylation. This is the first study demonstrating that statins inhibit growth of endometrial stromal cells. This effect is also demonstrable in the presence of a supply of cholesterol and may be related to decreased activation of MAPK3/1. The present observations may be relevant to potential therapeutic use of statins in conditions such as endometriosis.     

A new metabolomics analysis technique: steady-state metabolic network dynamics analysis

With the recent advances in experimental technologies, such as gas chromatography and mass spectrometry, the number of metabolites that can be measured in biofluids of individuals has markedly increased. Given a set of such measurements, a very common task encountered by biologists is to identify the metabolic mechanisms that lead to changes in the concentrations of given metabolites and interpret the metabolic consequences of the observed changes in terms of physiological problems, nutritional deficiencies, or diseases. In this paper, we present the steady-state metabolic network dynamics analysis (SMDA) approach in detail, together with its application in a cystic fibrosis study. We also present a computational performance evaluation of the SMDA tool against a mammalian metabolic network database. The query output space of the SMDA tool is exponentially large in the number of reactions of the network. However, (i) larger numbers of observations exponentially reduce the output size, and (ii) exploratory search and browsing of the query output space is provided to allow users to search for what they are looking for.