What predicts the richness of seeder and resprouter species in fire‐prone Cape fynbos: Rainfall reliability or vegetation density?

In ecosystems subject to regular canopy fires, woody species have evolved two general strategies of post‐fire regeneration. Seeder species are killed by fire and populations regenerate solely by post‐fire recruitment from a seed bank. Resprouter species survive fire and regenerate by vegetative regrowth from protected organs. Interestingly, the abundance of these strategies varies along environmental gradients and across regions. Two main hypotheses have been proposed to explain this spatial variation: the gap dependence and the environmental‐variability hypotheses. The gap‐dependence model predicts that seeders are favoured in sparse vegetation (vegetation gaps allowing effective post‐fire recruitment of seedlings), while resprouters are favoured in densely vegetated sites (seedlings being outcompeted by the rapid crown regrowth of resprouters). The environmental‐variability model predicts that seeders would prevail in reliable rainfall areas, whereas resprouters would be favoured in areas under highly variable rainfall that are prone to severe dry events (leading to high post‐fire seedling mortality). We tested these two models using distribution data, captured at the scale of quarter‐degree cells, for seeder and resprouter species of two speciose shrub genera (Aspalathus and Erica) common in fire‐prone fynbos ecosystems of the mediterranean‐climate part of the Cape Floristic Region. Contrary to the predictions of the gap‐dependence model, species number of both resprouters and seeders increased with values of the Normalized Difference Vegetation Index (a widely used surrogate for vegetation density), with a more marked increase for seeders. The predictions of the environmental‐variability hypothesis, by contrast, were not refuted by this study. Seeder and resprouter species of both genera showed highest richness in environments with high rainfall reliability. However, with decreasing reliability, seeder numbers dropped more quickly than those of resprouters. We conclude that the environmental‐variability model is better able to explain the abundance of woody seeder and resprouter species in Southern Hemisphere fire‐prone shrublands (fynbos and kwongan) than the gap‐dependence model.     

Interactive vocal communication at the nest by parent Great Tits Parus major

Although most bird species show monogamous pair bonds and bi‐parental care, little is known of how mated birds coordinate their activities. Whether or not partners communicate with each other to adjust their behaviour remains an open question. During incubation and the first days after hatching, one parent – generally the female – stays in the nest for extended periods, and might depend on acoustic communication to exchange information with its mate outside. The Great Tit Parus major is an interesting study system to investigate intra‐pair communication at the nest because males address songs to their mate while she is in the nest cavity, and females answer the male from the cavity with calls. However, the function of this communication remains unknown. In this study, we recorded the vocalizations and observed the resulting behaviour of Great Tit pairs around the nest at different breeding stages (laying, incubation and chick‐rearing). We observed vocal exchanges (vocalization bouts, alternated on the same tempo, between the female inside the nest and her male outside) in three contexts with different outcomes: (1) the female left the nest, (2) the male entered the box with food, and the female then used specific call types, (3) mates stopped calling but did not leave or enter the nest. The structure of vocal exchanges was globally stable between contexts, but females used calls with an up‐shifted spectrum during exchanges, at the end of which they left the nest or the male entered the nest. Birds vocalized more and at higher tempo during exchanges that ended up in feeding inside the nest. Birds also vocalized more during exchanges taking place during laying – a period of active mate guarding – than during incubation. We conclude that vocal exchanges could signal the females’ need for food and the males’ mate guarding behaviour, and discuss other possible functions of this communication.     

Data strategy for environmental assessment of agricultural regions via LCA: case study of a French catchment

Purpose

Various approaches have been carried out to extrapolate environmental assessments of farms to the regional level, some of them oversimplified and thus leading to high uncertainty. Key challenges include selection of a representative sample, construction of a farm/land use typology, the extrapolation strategy and dealing with data limitations. This work proposes a method for addressing these issues by means of statistically supported approaches.

Methods

We applied a novel approach combining a sampling strategy, estimation of farm-level environmental impacts via life cycle assessment (LCA), a farm typology based on principal component analysis, a statistical method for extending the farm sample given data constraints and finally linear extrapolation based on regional production and land use, taking into account the regional import–export balance. The approach was applied to a French case study, the Lieue de Grève catchment in the dairy-intensive Brittany region. A decision flowchart was developed to generalise the approach for similar applications dealing with farm and LCA data constraints. Additionally, innovative farm practices were modelled and their impacts propagated to the regional level.

Results and discussion

The typology developed identified “dairy”, “beef”, “dairy + beef” and “swine” farms as the dominant farm types in the region. While swine farms had the highest mean impacts per hectare, dairy and dairy + beef farms had impacts two to five times as high as those of beef and swine farms, when extrapolated to the entire catchment. Multiple linear regressions based on an extended farm and LCA dataset were used to predict environmental impacts of dairy farms lacking LCA results, thus increasing their sample size before extrapolation. The inclusion of farm and LCA data from a neighbouring region did not contribute to the accuracy of predicted impacts, as determined by comparing them to those of the farm closest to the dairy cluster’s centre, but rather produced significantly larger coefficients of variation. Results of tests of including two extra-regional farm and LCA datasets helped determine decision rules for the decision flowchart. Modelling of innovative agricultural practices yielded regional impacts consistent with previous estimates.

Conclusions

This approach provides a generalisable approach for farm typologies, data handling and regional extrapolation of farm-level LCAs, applicable to estimate environmental impacts of any agricultural area if requirements of a representative farm sample are met. We demonstrate the utility of the method for estimating effects of innovative agricultural practices on a region’s impacts by modelling practices on virtual farms and extrapolating their results.

     

Species delimitation and phylogeographic analyses in the Ectocarpus subgroup siliculosi (Ectocarpales,Phaeophyceae)

The genus Ectocarpus (Ectocarpales, Phaeophyceae) contains filamentous algae widely distributed in marine and estuarine habitats of temperate regions in both hemispheres. While E. siliculosus has become a model organism for genomics and genetics of the brown macroalgae, accurate species delineation, distribution patterns and diversity for the genus Ectocarpus remain problematic. In this study, we used three independent species delimitation approaches to generate a robust species hypothesis for 729 Ectocarpus specimens collected mainly along the European and Chilean coasts. These approaches comprised phylogenetic reconstructions and two bioinformatics tools developed to objectively define species boundaries (General Mixed Yule Coalescence Method and Automatic Barcode Gap Discovery). Our analyses were based on DNA sequences of two loci: the mitochondrial cytochrome oxidase subunit 1 and the nuclear internal transcribed spacer 1 of the ribosomal DNA. Our analyses showed the presence of at least 15 cryptic species and suggest the existence of incomplete lineage sorting or introgression between five of them. These results suggested the possible existence of different levels of reproductive barriers within this species complex. We also detected differences among species in their phylogeographic patterns, range and depth distributions, which may suggest different biogeographic histories (e.g., endemic species or recent introductions).