Observer Bias in Anuran Call Surveys

ABSTRACT Amphibian monitoring programs rarely question the quality of data obtained by observers and often ignore observer bias. In order to test for bias in amphibian call surveys, we sampled 29 clusters of wetlands from the Rainwater Basin, Nebraska, USA, totaling 228 functionally connected wetlands. Sampling consisted of 3-minute stops where volunteers recorded species heard and made digital recordings. Based on 627 samples, we examined 3 types of observer bias: omission, false inclusion (commission), and incorrect identification. Misidentification rates ranged from 4.2% to 18.3%. Relatively high and unquantified error rates can negatively affect the ability of monitoring programs to accurately detect the population or abundance trends for which most were designed.     

Population dynamics of perch, Perca fluviatilis L. in Slapton Ley, Devon

Perch, Percafluviatilis L. were studied in Slapton Ley which is a eutrophic freshwater lagoon in south Devon, England. The perch were caught in traps from February 1970 to June 1971. The traps selected males during the spawning season. The water temperature did not affect the numbers of trapped fish directly, but the sight of perch in the traps appeared to attract others. Sex ratios were found to be equal in the first 2 years of life but older year classes were predominantly female. The population consisted of young individuals. Males were found to mature in their first year and most females matured in their second. The fecundity varied from an average of 1000 eggs in perch n i the 9.75 cm length group to 30,500 eggs in fish in the 27.75 cm group. A few shoals of perch moved throughout the Ley although the majority of fish stayed in the same area. Population estimates showed a range from 10,000 to 95,000 for fish 9.75 cm and above. The large variations in population estimates and survival rates were attributed to the necessity of using traps which had variable catches and to the harmful effects of handling the perch. Chironomids were important in the diet of perch of all sizes. Plankton and Asellus were other important foods, the latter especially during the winter months. Perch 11.5 cm to 13.9 cm selected the widest range of food organisms. Only perch 14.0 cm and above ate fish.     

Incorporating Genotyping Error Into Non-Invasive DNA-Based Mark—Recapture Population Estimates

ABSTRACT Use of non-invasive sources of DNA, such as hair or scat, to obtain a genetic mark for population estimates is becoming commonplace. Unfortunately, with such marks, potentials for genotyping errors and for the shadow effect have resulted in use of many loci and amplification of each specimen many times at each locus, drastically increasing time and cost of obtaining a population estimate. We proposed a method, the Genotyping Uncertainty Added Variance Adjustment (GUAVA), which statistically adjusts for genotyping errors and the shadow effect, thereby allowing use of fewer loci and one amplification of each specimen per locus. Using allele frequencies and estimates of genotyping error rates, we determined, for each pair of specimens, the probability that the pair was obtained from the same individual, whether or not their observed genotypes match. Using these probabilities, we reconstructed possible capture history matrices and used this distribution to obtain a population estimate. With simulated data, we consistently found our estimates had lower bias and smaller variance than estimates based on single amplifications in which genotyping error was ignored and that were comparable to estimates based on data free of genotyping errors. We also demonstrated the method on a fecal DNA data set from a population of red wolves (Canis rufus). The GUAVA estimate based on only one amplification genotypes compares favorably to the estimate based on consensus genotypes. A program to conduct the analysis is available from the first author for UNIX or Windows platforms. Application of GUAVA may allow for increased accuracy in population estimates at reduced cost.     

Why Aye‐Ayes See Blue

The capacity for cone‐mediated color vision varies among nocturnal primates. Some species are colorblind, having lost the functionality of their short‐wavelength‐sensitive‐1 (SWS1) opsin pigment gene. In other species, such as the aye‐aye (Daubentonia madagascariensis), the SWS1 gene remains intact. Recent studies focused on aye‐ayes indicate that this gene has been maintained by natural selection and that the pigment has a peak sensitivity (λ_max) of 406 nm, which is ～20 nm closer to the ultraviolet region of the spectrum than in most primates. The functional significance behind the retention and unusual λ_max of this opsin pigment is unknown, and it is perplexing given that all mammals are presumed to be colorblind in the dark. Here we comment on this puzzle and discuss recent findings on the color vision intensity thresholds of terrestrial vertebrates with comparable optics to aye‐ayes. We draw attention to the twilight activities of aye‐ayes and report that twilight is enriched in short‐wavelength (bluish) light. We also show that the intensity of twilight and full moonlight is probably sufficient to support cone‐mediated color vision. We speculate that the intact SWS1 opsin pigment gene of aye‐ayes is a crepuscular adaptation and we report on the blueness of potential visual targets, such as scent marks and the brilliant blue arils of Ravenala madagascariensis.     

Mating,ovariole number and sperm production of the dengue vector mosquito Aedes aegypti (L.) in Australia: broad thermal optima provide the capacity for survival in a changing climate

Little is known about mating, ovariole number and sperm production of Aedes aegypti (L.) in Australia, especially in relation to climate. To determine the extent of interpopulation variation and thermal dependence of reproductive traits in A. aegypti, laboratory studies are conducted using colonies originating from up to four locations in Queensland, Australia. Observations of insemination reveal that these behaviours are temperature‐dependent, although humidity levels appear to have little effect, with only small increases in insemination at higher humidities. No noteworthy variations in thermal optima (temperature ranges within which maximal performance occurs) for such behaviours are observed between colonies, with all showing high levels of insemination between 25 and 35 ° C. Both male and female maximum fecundity for A. aegypti are also found to be temperature‐dependent. Sperm counts, not hitherto obtained for Australian A. aegypti, range from approximately 3000–5000 per male, with counts increasing with increased rearing and holding temperature, despite a decreasing body size. Conversely, ovary size decreases with temperature and body size, from approximately 100 ovarioles per female at 17 °C, to 85 at 35 °C. The lack of variation in reproductive capacity between colonies of different geographical origin indicates that any locally‐acting selective pressures are not driving divergence in key reproductive traits such as insemination ability and fecundity. This may be because the source populations used are not from sufficiently diverse climates. Nonetheless, the broad thermal optima for reproductive traits in A. aegypti are suggestive of limitations on these traits not being responsible for limiting distribution and population growth in the event of projected mean temperature rises.     

Population structure of the yellow-footed rock-wallaby Petrogale xanthopus (Gray, 1854) inferred from mtDNA sequences and microsatellite loci

The yellow-footed rock-wallaby Petrogale xanthopus is considered to be potentially vulnerable to extinction. This wallaby inhabits naturally disjunct rocky outcrops which could restrict dispersal between populations, but the extent to which that occurs is unknown. Genetic differences between populations were assessed using mitochondrial DNA (control region) sequencing and analysis of variation at four microsatellite loci among three geographically close sites in south-west Queensland (P. x. celeris) and, for mtDNA only, samples from South Australia (P. x. xanthopus) as well. Populations from South Australia and Queensland had phylogenetically distinct mtDNA, supporting the present classification of these two groups as evolutionarily distinct entities. Within Queensland, populations separated by 70 km of unsuitable habitat differed significantly for mtDNA and at microsatellite loci. Populations separated by 10 km of apparently suitable habitat had statistically homogeneous mtDNA, but a significant difference in allele frequency at one microsatellite locus. Tests for Hardy-Weinberg equilibrium and micro-geographical variation at microsatellite loci did not detect any substructuring between two wallaby aggregations within a colony encircling a single rock outcrop. Although the present study was limited by small sample sizes at two of the three Queensland locations examined, the genetic results suggest that dispersal between colonies is limited, consistent with an ecological study of dispersal at one of the sites. Considering both the genetic and ecological data, we suggest that management of yellow-footed rock-wallabies should treat each colony as an independent unit and that conservation of the Queensland and South Australian populations as separate entities is warranted.