Atmospheric nitrogen deposition explains patterns of plant species loss

Atmospheric nitrogen (N) deposition across Europe increased substantially from the 1950s to the 1990s. Targeted surveys suggest a negative correlation between N deposition and species richness within quadrats in sensitive habitats. However, it remains unclear whether plant species losses at national recording scales are correlated with nitrogen deposition. We relate plant species losses before 1987 in Great Britain to reduced and oxidized N deposition, land use change and climate change. The mean Ellenberg fertility (N) indices of plant species lost in each 100 km² cell before 1987 was compared with those of species that were recorded between 1987 and 1999. In 45% of squares, indices of species lost were significantly lower than those for species present after 1986. For 17%, primarily upland, squares, the opposite effect was found. A generalized least squares regression model, with difference in the mean Ellenberg N index between samples as the dependent variable, showed that higher deposition of reduced N was significantly associated with selective loss of species with a lower index. Arable land use and change in arable land use also demonstrated this positive relationship. Rough grazing, change in rough grazing, change in pasture and change in annual precipitation showed negative effects. Difference in Ellenberg R index was highly correlated with difference in Ellenberg N and was negatively correlated with oxidized N deposition, suggesting that the lack of a significant effect of oxidized N deposition on Ellenberg N was because it had effects through both acidification and eutrophication, while the effect of reduced N deposition was primarily through eutrophication. Our results suggest that N deposition, along with land use and precipitation changes, has been a significant driver of local plant extinctions. With N deposition increasing in many parts of the world, local extinctions of plant species may be experienced in other regions.     

Contrasting responses of Peromyscus mice of Yosemite National Park to recent climate change

Accurately predicting the response of species to climate change is crucial for the preservation of contemporary species diversity. In the current study, we analyze the response of two congeneric small mammal species (Peromyscus maniculatus and Peromyscus truei) to recent climate change in the region of Yosemite National Park (California, USA). The generalist P. maniculatus did not change its distribution in response to climate change while the specialist P. truei substantially changed its geographic and elevational distribution in the region, expanding into Yosemite. Using molecular genetic techniques we found that a cryptic geographic shift in genetic variation may have occurred within the geographically stable P. maniculatus distribution. Using a combination of morphometric and molecular genetic techniques we confirmed that a P. truei subspecies previously identified as a habitat specialist expanded into new habitat types, suggesting that this subspecies is not in fact a habitat specialist. Instead, we propose that the range of this subspecies is instead limited by climatic variables currently varying in response to contemporary climate change. These results underscore the importance of verifying the natural‐history‐based assumptions used to develop predictive models of species' response to climate change.     

Cycles of coral reef ‘turn‐on’, rapid growth and ‘turn‐off’ over the past 8500 years: a context for understanding modern ecological states and trajectories

Human activities threaten reef ecosystems globally, forcing ecological change at rates and scales regarded as unprecedented in the Holocene. These changes are so profound that a cessation of reef accretion (reef ‘turn‐off’) and net erosion of reef structures is argued by many as the ultimate and imminent trajectory. Here, we use a regional scale reef growth dataset, based on 76 core records (constrained by 211 radiometric dates) from 22 reefs along and across the inner‐shelf of the Great Barrier Reef, Australia, to examine the timing of different phases of reef initiation (‘turn‐on’), growth and ‘turn‐off’ during the Holocene. This dataset delineates two temporally discrete episodes of reef‐building over the last 8500 years: the first associated with the Holocene transgression‐early highstand period [～8.5–5.5 k calibrated years bp (cal ybp )]; the second since ～2.3 k cal ybp . During both periods, reefs accreted rapidly to sea level before entering late evolutionary states – states naturally characterized by reduced coral cover and low accretion potential – and a clear hiatus occurs between these reef‐building episodes for which no records of reef initiation exist. These transitions mimic those projected under current environmental disturbance regimes, but have been driven entirely by natural forcing factors. Our results demonstrate that, even through the late Holocene, reef health and growth has fluctuated through cycles independent of anthropogenic forcing. Consequently, degraded reef states cannot de facto be considered to automatically reflect increased anthropogenic stress. Indeed, in many cases degraded or nonaccreting reef communities may reflect past reef growth histories (as dictated by reef growth–sea level interactions) as much as contemporary environmental change. Recognizing when changes in reef condition reflect these natural ‘turn‐on’– growth –‘turn‐off’ cycles and how they interact with on‐going human disturbance is critical for effective coral reef management and for understanding future reef ecological trajectories.     

A new genus of Eulophidae (Hymenoptera: Chalcidoidea) with remarkable male genitalia

Abstract. A new genus of the subfamily Entedoninae (Hymenoptera: Chalcidoidea: Eulophidae), Perditomlus , is described. Male genitalia in species of this genus display extraordinary morphological differences to an extent which is unique in the Chalcidoidea, and the utility of this character and of male antenna in species identification is demonstrated. The value of male genitalia in chalcid systematics is discussed, and a possible reason for the exceptional development in Perditomlus is considered. Perditomlus includes thirty-three species, unless otherwise stated from Mexico: abruptus, angustatus, avirostris, bidenticulatus, bifidus, bilobus, calcaratus, crassiscapus, evanescens, falcispinus, faretus, flexilis, geniculates, grandiculus, hastatus, insternatus, languidiscapus, longiparameratus, magnicaulis, mucronatus, parameratulus, penicillatus (Mexico, U.S.A., Canada), pilosus, pinguiscapus (U.S.A.), planiscapus, porcodon, punctiscapus, sinuiscapus, trispinus. unispinus, verticillatus, woolleyi (Mexico, U.S.A.), and zolnerowichi. Perditomlus is considered most closely related to Omphale Haliday.     

Anoxic Seed Germination of Erythrina caffra: Ethanol Fermentation and Response to Metabolic Inhibitors

Erythrina caffra seeds were shown to be true anaerobic germinators.They exhibit a Pasteur effect, high alcohol dehydrogenase activityand produce high levels of ethanol under anoxia, in which situationgermination starts to be suppressed by as little as 0.1% externallyapplied ethanol. Toxic levels of ethanol production appear tobe prevented by a decrease in the rate of ethanol accumulation.Carbon monoxide does not inhibit germination. Cyanide, SHAM,iodoacetate, pyrazole, and 4-methylpyrazole are more inhibitoryto anoxic than aerobic germination whereas azide, arsenate,and fluoride inhibit both. Azide, pyrazole, 4-methylpyrazoleand a low concentration of cyanide and SHAM tend to stimulateethanol production in air. At 10 mol m^–3, 4-methylpyrazolestimulates anaerobic ethanol production. At higher concentrationsthis compound and all other inhibitors used suppress anaerobicethanol production initially. Inhibition of ethanol productionby 10 mol m^–3 cyanide is paralleled by an accumulationof acetaldehyde. Azide and cyanide appear to exert their inhibitoryeffect at different loci. Key words: Erythrina caffra, anoxic germination, fermentation, metabolic inhibitors     

Long-term frequency shifts in the chromosomal polymorphisms of Drosophila robusta in the Great Smoky Mountains

We resurveyed an elevational transect in the Great Smoky Mountains National Park first sampled in 1947 for chromosomal polymorphisms in populations of Drosophila robusta . Combining these results with those from previous surveys, unpublished data, and long-term meteorological data from this region up to 2003, we found that these chromosomal polymorphisms had continued to shift in frequency consistent with long-term temperature changes, yet had maintained elevational clines. Intensity of linkage disequilibrium for X-chromosome gene arrangements had shifted up and down the transect over the 56-year sampling period, suggesting shifting patterns of adaptation. Chromosomal frequency changes through the 1980s clearly demonstrated concerted directional evolution in response to cooler temperatures, but over the 20 years until 2003, frequency changes in most high-elevation populations reversed for many of the most temperature-sensitive gene arrangements.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 88 , 131–141.     

Long-term studies on the Windermere populations of perch (Perca fluviatilis), pike (Esox lucius) and Arctic charr (Salvelinus alpinus)

SUMMARY. 1, Windermere is a glacial valley lake with two basins separated by shallows and a total area of 14.8 km². Perch, pike and charr are the dominant fish species and have been studied on a continuous basis for over 45 years.
2. The initial slow-growing stocks of numerous small perch and moderate numbers of large pike were subjected to a heavy initial fishing pressure that was subsequently relaxed for perch but not for larger (>550 mm) pike. The number of charr in the lake has increased 6–8-fold during the study, probably due to the sustained reduction in the abundance of the larger pike that heavily predate the autumn spawning race of charr when it enters the shallow littoral areas to spawn.
3. The biomass of perch did not recover from the initial fishery until the late 1950s when strong year-classes occurred in warm summers. However, it was now composed of larger and faster growing individuals. In 1976, disease killed over 98% of all adult perch in the lake and the subsequent recovery has again been slow.
4. Existing models have explained the variation in perch year-class strength for the years 1959–74 in terms of adult perch biomass, pike cohort strength and temperature in the year of hatch. A new. more generally applicable model, incorporating a stock-recruitment expression, gives a better fit to the earlier data, particularly from the North Basin, where there have been periods of extremely low adult biomass.
5. The importance of continuing to extend these long-term data sets and the scope for future modelling work are discussed.     

Isolation and characterization of 125 microsatellite DNA markers in the blacklip abalone,Haliotis rubra

Australian abalone species are subject to wild harvest and aquaculture production. This study characterized 125 polymorphic microsatellite markers in the blacklip abalone, Haliotis rubra, and evaluated cross‐species amplification in Haliotis laevigata and Haliotis coccoradiata. Segregation analysis of a mapping family revealed non‐amplifying polymerase chain reaction null alleles at 34 loci. Cross‐species amplification was achieved for 89 loci.     

Quantifying components of risk for European woody species under climate change

Estimates of species extinction risk under climate change are generally based on differences in present and future climatically suitable areas. However, the locations of potentially suitable future environments (affecting establishment success), and the degree of climatic suitability in already occupied and new locations (affecting population viability) may be equally important determinants of risk. A species considered to be at low risk because its future distribution is predicted to be large, may actually be at high risk if these areas are out of reach, given the species' dispersal and migration rates or if all future suitable locations are only marginally suitable and the species is unlikely to build viable populations in competition with other species. Using bioclimatic models of 17 representative European woody species, we expand on current ways of risk assessment and suggest additional measures based on (a) the distance between presently occupied areas and areas predicted to be climatically suitable in the future and (b) the degree of change in climatic suitability in presently occupied and unoccupied locations. Species of boreal and temperate deciduous forests are predicted to face higher risk from loss of climatically suitable area than species from warmer and drier parts of Europe by 2095 using both the moderate B1 and the severe A1FI emission scenario. However, the average distance from currently occupied locations to areas predicted suitable in the future is generally shorter for boreal species than for southern species. Areas currently occupied will become more suitable for boreal and temperate species than for Mediterranean species whereas new suitable areas outside a species' current range are expected to show greater increases in suitability for Mediterranean species than for boreal and temperate species. Such additional risk measures can be easily derived and should give a more comprehensive picture of the risk species are likely to face under climate change.