Effects of Chemical Immobilization on Survival of African Buffalo in the Kruger National Park

ABSTRACT Capturing, immobilizing, and fitting radiocollars are common practices in studies of large mammals, but success is based on the assumptions that captured animals are representative of the rest of the population and that the capture procedure has negligible effects. We estimated effects of chemical immobilization on mortality rates of African buffalo (Syncerus caffer) in the Kruger National Park, South Africa. We used a Cox proportional hazards approach to test for differences in mortality among age, sex, and capture classes of repeatedly captured radiocollared buffalo. Capture variables did not improve model fit and the Cox regression did not indicate increased risk of death for captured individuals up to 90 days postcapture [exp (β) = 1.07]. Estimated confidence intervals, however, span from a halving to a doubling of the mortality rate (95% CI = 0.56–2.02). Therefore, capture did not influence survival of captured individuals using data on 875 captures over a 5-year period. Consequently, long-term research projects on African buffalo involving immobilization, such as associated with research on bovine tuberculosis, should result in minimal capture mortality, but monitoring of possible effects should continue.     

Impacts of birds of prey on gamebirds in the UK: a review

The influence of predators on the distribution, density and dynamics of their prey species has long been of interest to ecologists and wildlife managers. Where the prey population is also utilized by humans, conflicts may arise through competition for a limited resource. Because gamebird shooting in the UK provides employment, recreation and income, the impact of birds of prey on gamebird populations has been the subject of intense debate for many years. Various approaches have been used to assess the impacts that raptors have on gamebird populations. Here we review the applicability and limitations of the methods used and assess the scientific evidence for population-level and economic impacts of raptors on gamebird populations in the UK. Raptors may, in some situations, take large numbers of gamebirds and may be an important proximate cause of mortality, although few studies have addressed the impacts of raptors on either breeding or pre-shooting densities. Two exceptions are studies of Hen Harrier Circus cyaneus , Peregrine Falcon Falco peregrinus predation on Red Grouse Lagopus lagopus scoticus on moorland in Scotland and Sparrowhawk Accipiter nisus predation on Grey Partridge Perdix perdix on farmland in England. Both these studies suggested that raptors could have population-level impacts when their gamebird prey was already at low density. Studies on predation of captively bred gamebirds suggest that numbers taken by raptors at release pens vary considerably and in a few cases raptors have been documented killing relatively large numbers. On the whole, however, it appears that raptors account for a relatively small proportion of mortality among released birds and the impact on subsequent shooting bags is unknown. We summarize important gaps in current knowledge and recommend specific areas for future research.     

Glacial refugia in a maritime temperate climate: Cicada (Kikihia subalpina) mtDNA phylogeography in New Zealand

Understanding the biological significance of Pleistocene glaciations requires knowledge of the nature and extent of habitat refugia during glacial maxima. An opportunity to examine evidence of glacial forest refugia in a maritime, Southern Hemisphere setting is found in New Zealand, where the extent of Pleistocene forests remains controversial. We used the mitochondrial phylogeography of a forest-edge cicada ( Kikihia subalpina ) to test the hypothesis that populations of this species survived throughout South Island during the Last Glacial Maximum. We also compared mitochondrial DNA phylogeographic patterns with male song patterns that suggest allopatric divergence across Cook Strait. Cytochrome oxidase I and II sequences were analyzed using network analysis, maximum-likelihood phylogenetic estimation, Bayesian dating and Bayesian skyline plots. K. subalpina haplotypes from North Island and South Island form monophyletic clades that are concordant with song patterns. Song divergence corresponds to approximately 2% genetic divergence, and Bayesian dating suggests that the North Island and South Island population-lineages became isolated around 761 000 years bp . Almost all South Island genetic variation is found in the north of the island, consistent with refugia in Marlborough Sounds, central Nelson and northwest Nelson. All central and southern South Island and Stewart Island haplotypes are extremely similar to northern South Island haplotypes, a 'northern richness/southern purity' pattern that mirrors genetic patterns observed in many Northern Hemisphere taxa. Proposed southern South Island forest habitat fragments may have been too small to sustain populations of K. subalpina , and/or they may have harboured ecological communities with no modern-day analogues.     

Development and mapping of a public reference set of SSR markers in Lolium perenne L.

We report on the characterization and mapping of 76 simple sequence repeat (SSR) markers for Lolium perenne. These markers are publicly available or obtained either from genomic libraries enriched for SSR motifs or L. perenne expressed sequence tag (EST) clones. Four L. perenne mapping populations were used to map the SSR markers. A consensus linkage map of the four mapping populations containing 65 of the SSR markers is presented, together with primer information and a quality score indicating the usefulness of the SSR marker in different populations. The SSR markers identified all seven L. perenne linkage groups.     

Characterization of microsatellite loci in the endemic mound spring snail Fonscochlea accepta and cross species amplification in four other hydrobiid snails

We identified and characterized nine microsatellite primer pairs from Fonscochlea accepta, a species of hydrobiid snail endemic to artesian mound springs associated with the Great Artesian Basin in arid South Australia. The loci were highly polymorphic, with five to 30 alleles per locus. Gene diversity, estimated as expected heterozygosity ranged from 0.364 to 0.851, and was generally matched by levels of observed heterozygosity (0.373–0.829). Cross‐species amplification trials with four other hydrobiid species associated with these southern mound springs showed that these primers will be useful for genetic analyses of these other endemic snails.     

Interrelationships and diversification of Argynnis Fabricius and Speyeria Scudder butterflies

Diverse radiations of insects are often associated with adaptations to host plants, and well‐resolved phylogenetic relationships are required to fully understand them. Palearctic Argynnis and related subgenera, together with North American Speyeria butterflies make up a radiation whose species hypotheses are confounded by shared wing colour patterns between sympatric populations of closely related recognized species. Previous studies of this group indicate that Speyeria is a lineage within Argynnis, but sampling in these studies has either involved too few Speyeria species or incomplete sampling of Argynnis species. Thus, no comprehensive phylogenetic analysis exists for all members that answers the question of monophyly of Speyeria, or other subgeneric taxa, and their relationship to Argynnis species. We completed a phylogenetic analysis of all North American Speyeria species and all but one species within Argynnis, using one mitochondrial (cytochrome c oxidase I, COI) and four nuclear genes [elongation factor 1 alpha (EF1α), wingless (WG), glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH), and ribosomal protein S5 (RPS5)]. The results indicate three major lineages within Argynnis s.l.: two Palearctic and one containing both Palearctic and Nearctic species. In summary, the phylogenetic analyses suggest the need for reorganization into three natural groups: Argynnis, Fabriciana and Speyeria. Within each of these genera the phylogenetic hypothesis indicates an evolutionary history marked by rapid diversification and potential extinction, followed by ongoing lineage sorting. The position of North American Speyeria is nested within the Palearctic lineages, which indicates that the radiation began in Asia and was fuelled by existing Viola diversity in North America. Dating analyses of Viola and Speyeria corroborate this hypothesis. The current North American Speyeria species are mixed on the tree, indicating a recent and ongoing radiation. These results provide needed clarity on the evolution of this group, which contains species of conservation concern.     

Displacement of Mountain Caribou From Winter Habitat by Snowmobiles

Abstract: Mountain caribou are an ecotype of woodland caribou (Rangifer tarandus caribou) that live in subalpine forests in southeastern British Columbia, Canada, extending into northern Idaho and Washington, USA. These caribou are listed as Threatened in Canada, Endangered in the United States, and are the subject of recovery planning efforts in both countries. Many areas of mountain caribou winter habitat experience intensive use by recreational snowmobilers. During 4 surveys, we recorded caribou on all 4 census blocks with little or no snowmobile activity (x̄ density = 0.41 caribou/km²), but during 3 of 4 years, we observed no caribou on the census block with intensive snowmobile activity. The year we observed caribou on the snowmobile block, most were using areas inaccessible to snowmobiles. We used a Resource Selection Function (RSF) based on radiotelemetry data for the area to compare habitat quality among the different census blocks. The absence of caribou from the intensive snowmobile area during most years could not be explained by differences in habitat quality. The RSF predicted that the intensive snowmobile area could support 53-96 caribou (95% CI). We conclude that intensive snowmobiling has displaced caribou from an area of suitable habitat. We recommend that snowmobile activity be restricted from all or most high-quality mountain caribou habitat as part of the recovery planning process.     

Effect of Forest Fire Suppression on Buff-Breasted Flycatchers

ABSTRACT Buff-breasted flycatchers (Empidonax fulvifrons) are rare in the United States due to a >90% reduction in breeding distribution. Previous authors have implicated fire suppression in montane woodlands as the underlying cause of population declines and range contraction. We examined the effect of fire suppression on population declines of buff-breasted flycatchers by comparing both presence and abundance of flycatchers in areas with and without evidence of recent fire in 9 mountain ranges in southern Arizona, USA. We also replicated previous survey efforts conducted in 1980–1983 and 1995–1996 to determine population trajectory. Twenty-two (63%) of 35 survey routes had negative trends, and the average slope of the declines was −0.105 (10.5% annual decline). The number of buff-breasted flycatchers detected at a survey point was positively associated with severity of recent fires, and flycatchers were particularly associated with areas that had evidence of high-severity surface fire. However, we failed to detect flycatchers in 5 canyons that recently burned, which suggests one or more of the following: 1) fire suppression is not the cause (or is not the main cause) of population decline and range contraction, 2) flycatchers do not colonize burned areas until >10 years postfire, 3) low- or medium-severity fires are insufficient to make fire-suppressed areas suitable for breeding flycatchers, or 4) local recruitment and immigration are insufficient to allow buff-breasted flycatchers to expand into recent firerestored areas. Continued suppression of high-severity forest fires in the southwestern United States may eventually result in the extirpation of buff-breasted flycatchers. A landscape that includes a mosaic of recently burned and unburned forest patches appears to be most suitable for buff-breasted flycatchers. Prescribed burning is unlikely to help restore flycatcher populations unless burns are of high severity, conditions typically avoided during prescribed burns for safety reasons.