Pan-European regional-scale modelling of water and N efficiencies of rapeseed cultivation for biodiesel production

The energy produced from the investment in biofuel crops needs to account for the environmental impacts on soil, water, climate change and ecosystem services. A regionalized approach is needed to evaluate the environmental costs of large-scale biofuel production. We present a regional pan-European simulation of rapeseed ( Brassica napus ) cultivation. Rapeseed is the European Union's dominant biofuel crop with a share of about 80% of the feedstock. To improve the assessment of the environmental impact of this biodiesel production, we performed a pan-European simulation of rapeseed cultivation at a 10 × 10 km scale with Environmental Policy Integrated Climate (EPIC). The model runs with a daily time step and model input consists of spatialized meteorological measurements, and topographic, soil, land use, and farm management practices data and information. Default EPIC model parameters were calibrated based on literature. Modelled rapeseed yields were satisfactory compared with yields at regional level reported for 151 regions obtained for the period from 1995 to 2003 for 27 European Union member countries, along with consistent modelled and reported yield responses to precipitation, radiation and vapour pressure deficit at regional level. The model is currently set up so that plant nutrient stress is not occurring. Total fertilizer consumption at country level was compared with IFA/FAO data. This approach allows us to evaluate environmental pressures and efficiencies arising from and associated with rapeseed cultivation to further complete the environmental balance of biofuel production and consumption.     

Evolutionary distances for protein-coding sequences: modeling site- specific residue frequencies

Estimation of evolutionary distances from coding sequences must take into account protein-level selection to avoid relative underestimation of longer evolutionary distances. Current modeling of selection via site-to-site rate heterogeneity generally neglects another aspect of selection, namely position-specific amino acid frequencies. These frequencies determine the maximum dissimilarity expected for highly diverged but functionally and structurally conserved sequences, and hence are crucial for estimating long distances. We introduce a codon- level model of coding sequence evolution in which position-specific amino acid frequencies are free parameters. In our implementation, these are estimated from an alignment using methods described previously. We use simulations to demonstrate the importance and feasibility of modeling such behavior; our model produces linear distance estimates over a wide range of distances, while several alternative models underestimate long distances relative to short distances. Site-to-site differences in rates, as well as synonymous/nonsynonymous and first/second/third-codon-position differences, arise as a natural consequence of the site-to-site differences in amino acid frequencies.      

Genetic Improvement of Willow for Bioenergy and Biofuels

Willows (Salix spp.) are a very diverse group of catkin-bearing trees and shrubs that are widely distributed across temperate regions of the globe.Some species respond well to being grown in short rotation coppice (SRC) cycles,which are much shorter than conventional forestry.Coppicing reinvigorates growth and the biomass rapidly accumulated can be used as a source of renewable carbon for bioenergy and biofuels.As SRC willows re-distribute nutrients during the perennial cycle they require only minimal nitro...     

The incidence of the parasitic disease trichomoniasis and its treatment in reintroduced and wild Pink Pigeons Columba mayeri

The recovery programme for the endangered Pink Pigeon Columba mayeri Prévost, 1843 of Mauritius has involved intensive management to promote rapid population growth. As the Pink Pigeon population has increased in size and distribution, disease problems have emerged that have affected wild and reintroduced birds. Trichomoniasis first appeared in the remnant wild population in 1992, and became established in a reintroduced subpopulation on the offshore island of Ile aux Aigrettes. We aimed to control the disease by treating individuals and, on Ile aux Aigrettes, by routinely treating the population with medicated drinking water. On Ile aux Aigrettes, 49% of squabs were clinically diseased and only 27% of all squabs survived without treatment. Treatment of squabs that were not clinically diseased improved survival from 36 to 82%, suggesting that subclinical infections also affected survival. Subclinical infections were demonstrated by microscopy in 22% of Pink Pigeons and 17% of exotic doves on Ile aux Aigrettes. Clinical disease was observed in 4.5% of adults and 3.1% of juveniles, but more juveniles than adults died from the disease. It is likely that Trichomoniasis and other diseases will continue to affect the Pink Pigeon's recovery and the species may require long-term management to counteract the effects of disease and other limiting factors.     

Studies of Long-Range Density Effects on the Proliferation of 3T3 and RLCW Cells in Recirculated Medium

Swiss mouse 3T3 cells and rat liver-derived RLCW cells were grown in monolayers and perfused with culture medium. A flow-rate dependent increase in the growth rate was observed both by ³H-thymidine uptake and by a rise in cell numbers. The characteristics of the response were dependent on the recirculating volume and on whether serum was present in the culture medium. In RLC cultures perfused with serum-supplemented medium the growth promoting effect decreased with increasing density of the cells. In the absence of serum, recirculation of NCTC medium had no effect on RLCs but increased growth was observed in recirculated MEM. In 3T3 cultures, a linear response was observed over a limited density range in the presence of 10% serum-supplemented medium indicating that substances present in the serum substantially modify the behaviour of the monolayer to perfusion. In serum-free medium the effect of perfusion on 3T3 cultures was confined to a small density range and was consistent with the more rapid removal of a diffusible inhibitor from the pericellular environment by recirculating the medium. Treatment of the perfusing medium with immobilised proteinases (trypsin, chymotrypsin, protease) did not alter the response except in the presence of putrescine.     

Strategies for farmers and policy makers to control nitro-gen losses whilst maintaining crop production

The nitrogen (N) cycle is essentially 'leaky'. The losses of small amounts of nitrate to waters and of ammonia and nitrous oxide to the atmosphere are a part of the global biogeo-chemical N cycle. However, intensive agricultural production, industry and vehicle use have more than doubled the amount of 'reactive' N in the environment, resulting in eutrophication, ecosystem change and health concerns. Research has identified agricultural practices that cause large losses of N and, in some cases, developed solutions. This paper discusses the problems of maintaining productivity while reducing N losses, compares conventional with low input (integrated) and organic farming systems, and discusses wider options. It also looks at the need to integrate studies on N with other environmental impacts, set in the context of the whole farm system, to provide truly sustainable agricultural systems.     

RELATIONSHIPS BETWEEN SHELL SHAPE, WATER RESERVES, SURVIVAL AND GROWTH OF HIGHSHORE LITTORINIDS UNDER EXPERIMENTAL CONDITIONS IN NEW SOUTH WALES, AUSTRALIA

The shell morphologies of the highshore littorinids, Littorinaunifasciata Gray and Nodilittorina pyramidalis (Quoy & Gaimard)have previously been shown to vary at a variety of spatial scales,including among replicate sites at the same height, from heightto height and from shore to shore. In this study, the relationshipsbetween morphology of the shell, the reserves of water heldwithin the shell, the size of the foot and survival on differentshores and rates of growth in different habitats were examinedfor L. unifasciata and, to a lesser extent, N. pyramidalis.Reserves of water were not consistently related to size or shapeof the shell, but did increase as relative weight of shell increased.This may be due to the relatively smaller body providing moreinternal volume for extra-corporeal water. Water reserves andthe amount of free water held in the shell were also not relatedto loss of water or survival during extended periods of emersion.Although the shape of the shell on sheltered and exposed shoreswas correlated with size of the foot, with the snails on anexposed shore having larger apertures and feet than those ona sheltered shore, transplant experiments did not show differentialmortality between morphs from the different shores. All translocatedand transplanted snails disappeared from the exposed shore ata greater rate than from the sheltered shore, but this was probablydue to the snails dispersing out of the experimental areas ratherthan due to mortality. Therefore, many of the large-scale modelsthat have previously been used to describe patterns of shellshape in intertidal gastropods do not appear to be importantin these highshore littorinids. Finally, field experiments ongrowth of juvenile L. unifasciata indicated that rate of growth,largely governed by opportunity to feed rather than type andquantity of food, is the most likely explanation for the small-and large-scale patterns of shell shape that have been previouslydescribed in this species. (Received 22 October 1996; accepted 19 February 1997)