Grb7 SH2 domain structure and interactions with a cyclic peptide inhibitor of cancer cell migration and proliferation

Background

Human growth factor receptor bound protein 7 (Grb7) is an adapter protein that mediates the coupling of tyrosine kinases with their downstream signaling pathways. Grb7 is frequently overexpressed in invasive and metastatic human cancers and is implicated in cancer progression via its interaction with the ErbB2 receptor and focal adhesion kinase (FAK) that play critical roles in cell proliferation and migration. It is thus a prime target for the development of novel anti-cancer therapies. Recently, an inhibitory peptide (G7-18NATE) has been developed which binds specifically to the Grb7 SH2 domain and is able to attenuate cancer cell proliferation and migration in various cancer cell lines.

Results

As a first step towards understanding how Grb7 may be inhibited by G7-18NATE, we solved the crystal structure of the Grb7 SH2 domain to 2.1 Å resolution. We describe the details of the peptide binding site underlying target specificity, as well as the dimer interface of Grb 7 SH2. Dimer formation of Grb7 was determined to be in the μM range using analytical ultracentrifugation for both full-length Grb7 and the SH2 domain alone, suggesting the SH2 domain forms the basis of a physiological dimer. ITC measurements of the interaction of the G7-18NATE peptide with the Grb7 SH2 domain revealed that it binds with a binding affinity of K_d = ~35.7 μM and NMR spectroscopy titration experiments revealed that peptide binding causes perturbations to both the ligand binding surface of the Grb7 SH2 domain as well as to the dimer interface, suggesting that dimerisation of Grb7 is impacted on by peptide binding.

Conclusion

Together the data allow us to propose a model of the Grb7 SH2 domain/G7-18NATE interaction and to rationalize the basis for the observed binding specificity and affinity. We propose that the current study will assist with the development of second generation Grb7 SH2 domain inhibitors, potentially leading to novel inhibitors of cancer cell migration and invasion.     

Patterns of abundance of fire ants and native ants in a native ecosystem

Abstract 1. This correlational study examines the relationship between the red imported fire ant (Solenopsis invicta) and native ants in a longleaf pine savanna. Fire ants are frequently associated with a decline in native ants throughout the invaded range, but fire ant invasion is often coupled with habitat disturbance. Invasion of fire ants into the longleaf pine savanna provides an opportunity to examine the structure of the ant community in the absence of habitat disturbance. 2. Pitfall trapping was conducted within the longleaf pine savanna as well as across a naturally occurring soil moisture gradient, in plots that had been artificially watered. 3. Species richness did not vary as a function of fire ant density. There was an inverse relationship between native ant density and fire ant density, but this abundance pattern does not necessarily imply a causal link between fire ant invasion and native ant decline. For individual species, fire ant densities were negatively correlated with the densities of only two native ant species, including Solenopsis carolinensis, a native species that potentially limits the invasion of fire ants. Additionally, fire ants and native ants respond differently to soil moisture, with native ants favouring drier conditions than fire ants. 4. The possible exclusion of fire ants by some native ants, as well as differences in habitat preferences, provide alternative explanations for the frequently observed negative correlation between fire ants and native ants.     

The small regulatory RNA molecule MicA is involved in <Emphasis Type="Italic">Salmonella enterica</Emphasis> serovar Typhimurium biofilm formation

Background  

LuxS is the synthase enzyme of the quorum sensing signal AI-2. In Salmonella Typhimurium, it was previously shown that a luxS deletion mutant is impaired in biofilm formation. However, this phenotype could not be complemented by extracellular addition of quorum sensing signal molecules.     

Functional characterisation of the regulation of CAAT enhancer binding protein alpha by GSK-3 phosphorylation of Threonines 222/226

Background  

Glycogen Synthase Kinase-3 (GSK3) activity is repressed following insulin treatment of cells. Pharmacological inhibition of GSK3 mimics the effect of insulin on Phosphoenolpyruvate Carboxykinase (PEPCK), Glucose-6 Phosphatase (G6Pase) and IGF binding protein-1 (IGFBP1) gene expression. CAAT/enhancer binding protein alpha (C/EBPα) regulates these gene promoters in liver and is phosphorylated on two residues (T222/T226) by GSK3, although the functional outcome of the phosphorylation has not been established. We aimed to establish whether CEBPα is a link between GSK3 and these gene promoters.     

Out on a Limb Parallels in Vertebrate and Invertebrate Limb Patterning and the Origin of Appendages

Recent discoveries of similarities in the developmental geneticsunderlying the formation of insect and vertebrate eyes, hearts,segments, and other structures have fueled new speculation anddebate about the origins of these features and the morphologicalcomplexity of early bilaterians. The pivotal issue concerningthese developmental similarities is whether they represent convergenceof pattern-forming mechanisms or reveal developmental regulatorymechanisms or even physical characteristics derived from a commonancestor. Here, we set forth an explicit hierarchical set ofcriteria for assessing developmental genetic similarities amonganimals. We suggest that interpretations of convergence versusdescent from common ancestors should be weighed by the number,type, and phylogenetic distribution of genetic regulatory similarities.We then apply these criteria to the analysis of appendage evolution.We conclude that there has been no continuity of any structurefrom which the insect and vertebrate appendages could be derived,i.e., they are not homologous structures. However, there isabundant evidence for continuity in the genetic informationfor building body wall outgrowths and/or appendages in severalphyla which must date at least to the common, potential appendage-bearingpre-Cambrian ancestor of most protostomes and deuterostomes.In order to further trace the origin of this genetic informationand of appendages, it will be essential to analyze more primitivetaxa such as the Cnidaria and to obtain a much better fossilrecord of pre-Cambrian animals.