Teucrium francoi M. Seq., Capelo, J.C. Costa & R. Jardim, a new species of Teucrium gr. scorodonia (Lamiceae) from Madeira

The species formerly recognized as Teucrium scorodonia in Madeira is here described as new: Teucrium francoi M. Seq., Capelo, J.C. Costa & R. Jardim. Morphologically close to species of Teucrium gr. scorodonia [ T. scorodonia L., T. pseudoscorodonia Desf., T. siculum (Raf.) Guss. and T. kotschyanum Poech], it exhibits, nonetheless, some distinct diagnostic characters. The indumentum density and type of hairs of T. francoi are clearly distinct from those of related species, as are the shape and dimensions of the leaves and bracts, calyx, and corolla, which are all taken as taxonomically significant diagnostic features. A diagnosis and a distribution map are presented for this new species. Morphology, ecology, biogeography, and conservation issues are discussed. Teucrium francoi , which is an endemic from Madeira (Portugal), is to be found mostly in the scope of the association Teucrio francoi–Origanetum virentis J.C. Costa, Capelo, Jardim, Sequeira, Lousã & Rivas-Martínez, but also occurs in somewhat humid habitats, such as open stands of Rosa mandonii Déségl. associated with small streams.  © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society , 2008, 156 , 639–647.     

Cytogenetics of Bolinus brandaris and phylogenetic inferences within the Muricidae (Mollusca: Gastropoda)

The purple dye murex, Bolinus brandaris (Linnaeus, 1758), is a muricid gastropod common throughout the Mediterranean and along the Moroccan and Portuguese Atlantic coasts. In the present study, we confirmed the diploid chromosome number of 2 n  = 70 for this species, and established for the first time the karyotype, which comprised 12 metacentric, 15 submetacentric and eight subtelocentric chromosome pairs. To facilitate cytotaxonomic comparisons, we carried out a comparative karyological analysis through multidimensional scaling between B. brandaris and three other 2 n  = 70 muricid species ( Hexaplex trunculus , Ocenebra erinaceus , and Stramonita haemastoma ) for which chromosomal measurements have been previously published. The interpretation of the ideograms and the statistical analysis highlighted the closest similarity of B. brandaris and H. trunculus compared to S. haemastoma and O. erinaceus . Indeed, B. brandaris and H. trunculus showed the smallest dissimilarities both for relative length and arm ratio, with O. erinaceus presenting intermediate values, whereas the highest dissimilarities were found between H. trunculus and S. haemastoma for both data. The karyotypes of B. brandaris and H. trunculus (subfamily Muricinae) presented the highest proportions of metacentric chromosomes compared to the other two muricids analysed, suggesting that those karyotypes could be considered primitive within the 2 n  = 70 Muricidae studied so far.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 185–193.     

Australia's marine biogeography revisited: Back to the future?

The recognition of broad biogeographic provinces provides an important framework for ecological and conservation biological research. Marine biologists have long recognized distinct biogeographic provinces in southern Australia, primarily on the basis of qualitative differences in intertidal species assemblages. Here we provide an a priori test for these traditional eastern (Peronian), western (Flindersian) and south‐eastern (Maugean) provinces. Specifically, we analyse distributional data for approximately 1500 algal species using the newly available Australian Virtual Herbarium, an online database of herbarium specimens. Our quantitative algal analyses across southern Australia identify three distinct biogeographic assemblages, consistent with traditional qualitative provinces. We argue that these broad provinces provide a highly effective framework for understanding and managing Australia's marine biodiversity. In particular, biogeographic provinces provide a regional framework for integrating the ongoing discovery of biological variation at finer scales. More broadly therefore we recommend that biologists undertake quantitative analyses to test provincial biogeographic boundaries around the globe.     

Soil organic carbon stock change due to land use activity along the agricultural frontier of the southwestern Amazon,Brazil, between 1970 and 2002

The southwestern portion of the Brazilian Amazon arguably represents the largest agricultural frontier in the world, and within this region the states of Rondônia and Mato Grosso have about 24% and 32% of their respective areas under agricultural management, which is almost half of the total area deforested in the Brazilian Amazon biome. Consequently, it is assumed that deforestation in this region has caused substantial loss of soil organic carbon (SOC). In this study, the changes in SOC stocks due to the land use change and management in the southwestern Amazon were estimated for two time periods from 1970–1985 and 1985–2002. An uncertainty analysis was also conducted using a Monte Carlo approach. The results showed that mineral soils converted to agricultural management lost a total of 5.37 and 3.74 Tg C yr^?1 between 1970–1985 and 1985–2002, respectively, along the Brazilian Agricultural Frontier in the states of Mato Grosso and Rondônia. Uncertainties in these estimates were ±37.3% and ±38.6% during the first and second time periods, respectively. The largest sources of uncertainty were associated with reference carbon (C) stocks, expert knowledge surveys about grassland condition, and the management factors for nominal and degraded grasslands. These results showed that land use change and management created a net loss of C from soils, however, the change in SOC stocks decreased substantially from the first to the second time period due to the increase in land under no‐tillage.     

Net greenhouse gas fluxes in Brazilian ethanol production systems

Biofuels are both a promising solution to global warming mitigation and a potential contributor to the problem. Several life cycle assessments of bioethanol have been conducted to address these questions. We performed a synthesis of the available data on Brazilian ethanol production focusing on greenhouse gas (GHG) emissions and carbon (C) sinks in the agricultural and industrial phases. Emissions of carbon dioxide (CO₂) from fossil fuels, methane (CH₄) and nitrous oxide (N₂O) from sources commonly included in C footprints, such as fossil fuel usage, biomass burning, nitrogen fertilizer application, liming and litter decomposition were accounted for. In addition, black carbon (BC) emissions from burning biomass and soil C sequestration were included in the balance. Most of the annual emissions per hectare are in the agricultural phase, both in the burned system (2209 out of a total of 2398 kg C_eq), and in the unburned system (559 out of 748 kg C_eq). Although nitrogen fertilizer emissions are large, 111 kg C_eq ha^?1 yr^?1, the largest single source of emissions is biomass burning in the manual harvest system, with a large amount of both GHG (196 kg C_eq ha^?1 yr^?1). and BC (1536 kg C_eq ha^?1 yr^?1). Besides avoiding emissions from biomass burning, harvesting sugarcane mechanically without burning tends to increase soil C stocks, providing a C sink of 1500 kg C ha^?1 yr^?1 in the 30 cm layer. The data show a C output: input ratio of 1.4 for ethanol produced under the conventionally burned and manual harvest compared with 6.5 for the mechanized harvest without burning, signifying the importance of conservation agricultural systems in bioethanol feedstock production.     

Patch choice from a distance and use of habitat information during foraging by the parasitoid Ibalia leucospoides

1. In environments in which resources are distributed heterogeneously, patch choice and the length of time spent on a patch by foragers are subject to strong selective pressures. This is particularly true for parasitoids because their host foraging success translates directly into individual fitness. 2. The aim of this study was to test whether: (i) females of the parasitoid Ibalia leucospoides (Hymenoptera: Ibaliidae) can discriminate among patches according to host numbers; (ii) the surrounding context affects the initial choice of patch, as well as time spent on patch; and (iii) the perceived quality of a given patch is affected by the quality of the surrounding patches. 3. Each female was randomly exposed to one of three different three‐patch environments which differed in host number per patch, mean environment host number and host distribution among patches. For each treatment level, the first patch chosen and the time allocated to each patch visited by the female were recorded. 4. Females of I. leucospoides were able to discriminate different levels of host numbers among patches from a distance. The patch bearing the highest number of hosts was, predominantly, the first choice. Patch host number in association with mean habitat profitability influenced the length of time spent on the first patch visited. By contrast, variance in habitat profitability did not influence time allocation decisions. Contrary to the study prediction, there were no significant habitat‐dependent time allocation differences among patches holding the same number of hosts. 5. The results indicate that, for I. leucospoides, patch exploitation decisions are partially influenced by information obtained from the habitat as a whole, a behaviour that may prove to indicate adaptive ability in highly patchy environments, as well as suggesting the presence of good cognitive abilities in this parasitoid species.     

Identification of Immunogenic Epitopes of the 170-kDa Subunit Adhesin of Entamoeba histolytica in Patients with Invasive Amebiasis

ABSTRACT. Entamoeba histolytica causes amebic dysentery (AD) and liver abscess (ALA). Little is known about protective immunity to amebiasis, and studies in this area have been complicated by the paucity of defined ameba antigens. We examined the proliferative responses of peripheral blood mononuclear cells (PBMC) from patients with AD and ALA to a recombinant protein containing a portion of the 170 kDa adhesin of E. histolytica (170CR), and to two synthetic peptides (1 and 2) derived from the 170 kDa sequence that were predicted to contain T cell epitopes. A significant number of patients with AD and ALA had PBMC that proliferated to 170CR molecule, and several individuals with ALA and AD had T cells that recognized one or both peptides. Contrarily, individuals from a non-endemic region for amebiasis did not respond to 170CR protein, or to both peptides. In regard to antibody response, nine of fifteen patients with ALA showed antibodies to 170CR protein. These same patients had antibodies to peptide 2. We identified peptides from 170-kDa adhesin that may contain both T and B cell epitopes recognized by some patients with invasive amebiasis. These peptides may be valuable reagents in studies of the immune response to amebiasis.     

Identification and functional characterization of the Arabidopsis Snf1‐related protein kinase SnRK2.4 phosphatidic acid‐binding domain

Phosphatidic acid (PA) is an important signalling lipid involved in various stress‐induced signalling cascades. Two SnRK2 protein kinases (SnRK2.4 and SnRK2.10), previously identified as PA‐binding proteins, are shown here to prefer binding to PA over other anionic phospholipids and to associate with cellular membranes in response to salt stress in Arabidopsis roots. A 42 amino acid sequence was identified as the primary PA‐binding domain (PABD) of SnRK2.4. Unlike the full‐length SnRK2.4, neither the PABD‐YFP fusion protein nor the SnRK2.10 re‐localized into punctate structures upon salt stress treatment, showing that additional domains of the SnRK2.4 protein are required for its re‐localization during salt stress. Within the PABD, five basic amino acids, conserved in class 1 SnRK2s, were found to be necessary for PA binding. Remarkably, plants overexpressing the PABD, but not a non‐PA‐binding mutant version, showed a severe reduction in root growth. Together, this study biochemically characterizes the PA–SnRK2.4 interaction and shows that functionality of the SnRK2.4 PABD affects root development.