Disentangling composite colour patterns in a poison frog species

A phylogenetic approach was performed to infer whether variation in conspicuous colour-patterns of a poison frog (Dendrobatidae: Dendrobates tinctorius ) has evolved neutrally or under selection. Colour and pattern were split into components that were separately analysed and subsequently re-grouped via principal component analysis. This revealed four different 'displayed' factors on the dorsal and lateral views versus one 'concealed' factor on the ventral view. Based on the assumption that current patterns of trait variation contain information about the evolutionary history of the phenotype, we correlated these trait components to a neutrally evolving gene fragment (cytochrome b ). The concealed factor was significantly correlated with the marker fragment, which identified it as having evolved under genetic drift. Noncorrelation of all displayed factors with the marker may indicate the evolution of colour patterns on dorsum and flanks under selection. In our example, colour pattern should therefore be regarded as a multicomponent signal system.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 433–444.     

Cortical and Nuclear Events During Cell Division and Resting Cyst Formation in Colpoda inflata

Nuclear and cortical phenomena during dividing and resting cyst formation of Colpoda inflata are described. Cell division forms a cyst and produces two or four tomites. In each tomite, the right oral field results from the proliferation of the anterior extreme of a single kinety, and the left oral field results from the proliferation of four, five, or six somatic kineties. After macronuclear division, each macronuclear mass undergoes a chromatinic extrusion process. During resting cyst formation, the oral infraciliature of the vegetative cell is resorbed. The somatic kineties dispose in a radial way and some pairs of kinetosomes disappear. As in cell division, there is an extrusion process. From these results we conclude that the resting cysts of Colpoda inflata cannot be included in any group of the previous classifications for hypotrich resting cysts. Thus, we propose a new additional group to Walker and Maugel's classification called PKR (partial-kinetosome-resorbing) cysts.     

Solar UVB and warming affect decomposition and earthworms in a fen ecosystem in Tierra del Fuego, Argentina

Combined effects of co-occurring global climate changes on ecosystem responses are generally poorly understood. Here, we present results from a 2-year field experiment in a Carex fen ecosystem on the southernmost tip of South America, where we examined the effects of solar ultraviolet B (UVB, 280–315 nm) and warming on above- and belowground plant production, C : N ratios, decomposition rates and earthworm population sizes. Solar UVB radiation was manipulated using transparent plastic filter films to create a near-ambient (90% of ambient UVB) or a reduced solar UVB treatment (15% of ambient UVB). The warming treatment was imposed passively by wrapping the same filter material around the plots resulting in a mean air and soil temperature increase of about 1.2 °C. Aboveground plant production was not affected by warming, and marginally reduced at near-ambient UVB only in the second season. Aboveground plant biomass also tended to have a lower C : N ratio under near-ambient UVB and was differently affected at the two temperatures (marginal UVB × temperature interaction). Leaf decomposition of one dominant sedge species ( Carex curta ) tended to be faster at near-ambient UVB than at reduced UVB. Leaf decomposition of a codominant species ( Carex decidua ) was significantly faster at near-ambient UVB; root decomposition of this species tended to be lower at increased temperature and interacted with UVB. We found, for the first time in a field experiment that epigeic earthworm density and biomass was 36% decreased by warming but remained unaffected by UVB radiation. Our results show that present-day solar UVB radiation and modest warming can adversely affect ecosystem functioning and engineers of this fen. However, results on plant biomass production also showed that treatment manipulations of co-occurring global change factors can be overridden by the local climatic situation in a given study year.     

Nitrogen aboveground turnover and soil stocks to 8 m depth in primary and selectively logged forest in southern Amazonia

Extensive areas of Amazonia undergo selective logging, modifying forest structure and nutrient cycles. Anthropogenic‐accelerated rates of nitrogen (N) turnover could increase N loss and affect regeneration, carbon sequestration and timber production. We quantified leaf area reduction, canopy opening and downed biomass and resultant N flux from reduced impact logging (RIL) activities. We compared canopy reduction, surface soil moisture and nitrate to 8 m depth between logged gaps and intact primary forest to determine if logging activities increase subsoil nitrate. To test long‐term logging effects, we evaluated surface N stocks along a 12‐year postlogging chronosequence. At the harvest rate of 2.6 trees ha^?1, total N additions in logging gaps, including leaves and wood from felled crowns (24.8 kg N ha^?1) and other killed trees (41.9 kg N ha^?1), accounted for over 80% of the total N addition to aboveground necromass from all logging activities (81.9 kg N ha^?1). Despite this N turnover by logging, belowground nitrate storage to 8 m depth did not differ between logging gaps and primary forest at the low harvest rate and disturbance intensity of this study. Soil water depletion also did not differ between gaps and primary forest over 1 year, indicating the impact on belowground inorganic N was low. Compared with primary forest, nitrate concentrations to 8 m depth in logging gaps were only significantly higher at 60–100 cm, suggesting some N redistribution beyond the bulk of the fine roots in logging gaps. Extrapolated to the Amazon Basin scale, we provide a conservative estimate that logging damage and bole export under RIL would turn over 0.14 ± 0.07 to 0.23 ± 0.12 Tg N yr^?1 based on 1999–2002 selective logging rates. Greater damage during conventional selective logging would cause higher N turnover throughout the Amazon Basin than our results based on RIL.     

Nest-site selection by Great Bustards Otis tarda suggests a trade-off between concealment and visibility

Great Bustards Otis tarda have expanded their habitat range from historical occupancy of natural steppes to arable farmland, where the species initially benefited from favourable feeding conditions. More recently, the species has suffered severe declines due partly to agricultural intensification. Nest losses and juvenile mortality are amongst the factors most seriously affecting survival probabilities of many populations of this endangered species, suggesting that management of nesting habitats would bring conservation benefits. We studied nest-site selection in a Great Bustard population of central Spain by radiotracking 42 females for periods of between 1 and 4 years. Females selected nest-sites in fallows or cereal fields, in areas of low patch-type diversity, far from human infrastructure, and with good horizontal visibility. These results suggest that females look for shelter, but also need to have good visibility while incubating, and they support the hypothesis that nest selection is a trade-off between concealment and visibility. We interpret both preferences as adaptations to reduce predation pressure, one of the main causes of nest failure in this species. Nests were placed on slopes significantly orientated to the southeast, which suggests that females also seek sites protected from the cold north-westerly winds that are prevalent in the study area. To reduce nest destruction, harvesting should be delayed as long as possible and habitat conservation measures should not be restricted to lek sites but also include nesting areas, which are frequently located far from leks.     

Use of Camera-Trapping to Estimate Puma Density and Influencing Factors in Central Brazil

Abstract: We used remotely triggered cameras to collect data on Puma (Puma concolor) abundance and occupancy in an area of tropical forest in Brazil where the species' status is poorly known. To evaluate factors influencing puma occupancy we used data from 5 sampling campaigns in 3 consecutive years (2005 to 2007) and 2 seasons (wet and dry), at a state park and a private forest reserve. We estimated puma numbers and density for the 2007 sampling data by developing a standardized individual identification method. We based individual identification on 1) time-stable parameters (SP; physical features that do not change over time), and 2) time-variable parameters (VP; marks that could change over time such as scars and botfly marks). Following individual identification we established a capture-recapture history and analyzed it using closed population capture-mark-recapture models. Puma capture probability was influenced by camera placement (roads vs. trails), sampling year, and prey richness. Puma occupancy was positively associated with species richness and there was a correlation between relative puma and jaguar (Panthera onca) abundance. Identifications enabled us to generate 8 VP histories for each photographed flank, corresponding to 8 individuals. We estimated the sampled population at 9 pumas (SE = 1.03, 95% CI = 8–10 individuals) translating to a density of 3.40 pumas/100 km². Information collected using camera-traps can effectively be used to assess puma population size in tropical forests. As habitat progressively disappears and South American felines become more vulnerable, our results support the critical importance of private forest reserves for conservation.     

Genetic differentiation in the urban habitat: the great tits (Parus major) of the parks of Barcelona city

The increase of urban areas has led to a fragmentation of habitats for many forest‐living species. Man‐made parks might be a solution, but they can also act as sinks that are unable to maintain themselves without immigration from natural areas. Alternatively, parks might act as true metapopulations with extinctions and colonizations. In both cases, we can expect genetic variation to be reduced in the parks compared to the natural habitat. A third alternative is that the parks have sufficient reproduction to maintain themselves. To test these hypotheses, we analysed the pattern of genetic variation in the great tit (Parus major) in 12 parks in central Barcelona, and in an adjacent forest population using microsatellites. Genetic variation was not lower in the parks compared to the forest population, but larger, and gene flow was higher from the town to the forest compared to vice versa. We found a significant genetic differentiation among the parks, with a structure that only partly reflected the geographic position of the parks. Relatedness among individuals within parks was higher than expected by chance, although we found no evidence of kin groups. Assignment tests suggest that some parks are acting as net donors of individuals to other parks. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 99 , 9–19.     

Electric fishes of the genus Sternarchorhynchus (Teleostei,Ostariophysi, Gymnotiformes); phylogenetic and revisionary studies

Analysis of 88 characters of external and internal body systems yielded a phylogenetic reconstruction of the Neotropical electric knifefish genus Sternarchorhynchus (Apteronotidae; Gymnotiformes). The results support a hypothesis of Sternarchorhynchus as the sister group to Platyurosternarchus. A series of synapomorphies, many involving major innovations of the neurocranium, jaws, suspensorium, and associated systems that permit an unusual mode of grasp‐suction feeding, support the monophyly of both genera. Synapomorphies largely resolve relationships within Sternarchorhynchus with basal nodes strongly supported by characters pertinent to prey capture and initial processing of food items. These possible key innovations may provide Sternarchorhynchus with a competitive advantage over other clades of the Apteronotidae and account for the species diversity of the genus in Neotropical rivers. Adaptive radiation in Sternarchorhynchus was analysed. Habitat preference transitions repeatedly occurred in the genus between deep‐river channel dwelling species and rheophilic species with preferences for higher energy setting including rapids and swift‐flowing fluviatile settings. Twenty‐two species of Sternarchorhynchus are described as new based on samples that originated in the smaller rivers draining into the Golfo de Paria, the Marowijne and Essequibo River basins, the Río Orinoco and in particular the Amazon River basin. The 32 species in Sternarchorhynchus make it the most speciose genus in the Apteronotidae. No claim to original US government works. Journal compilation © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 159 , 223–371.     

The regional variation of aboveground live biomass in old-growth Amazonian forests

The biomass of tropical forests plays an important role in the global carbon cycle, both as a dynamic reservoir of carbon, and as a source of carbon dioxide to the atmosphere in areas undergoing deforestation. However, the absolute magnitude and environmental determinants of tropical forest biomass are still poorly understood. Here, we present a new synthesis and interpolation of the basal area and aboveground live biomass of old‐growth lowland tropical forests across South America, based on data from 227 forest plots, many previously unpublished. Forest biomass was analyzed in terms of two uncorrelated factors: basal area and mean wood density. Basal area is strongly affected by local landscape factors, but is relatively invariant at regional scale in moist tropical forests, and declines significantly at the dry periphery of the forest zone. Mean wood density is inversely correlated with forest dynamics, being lower in the dynamic forests of western Amazonia and high in the slow‐growing forests of eastern Amazonia. The combination of these two factors results in biomass being highest in the moderately seasonal, slow growing forests of central Amazonia and the Guyanas (up to 350 Mg dry weight ha^?1) and declining to 200–250 Mg dry weight ha^?1 at the western, southern and eastern margins. Overall, we estimate the total aboveground live biomass of intact Amazonian rainforests (area 5.76 × 10⁶ km² in 2000) to be 93±23 Pg C, taking into account lianas and small trees. Including dead biomass and belowground biomass would increase this value by approximately 10% and 21%, respectively, but the spatial variation of these additional terms still needs to be quantified.     

Contrasting functional trait syndromes underlay woody alien success in the same ecosystem

We performed a comprehensive comparative study of functional traits in coexisting alien and native woody species in order to examine the strategies related to resource use and dispersion underlying alien success in mountain Chaco woodlands of central Argentina. Our approach integrated seemingly contrasting pieces of evidence in the region. We specifically assessed whether (i) the ‘functional acquisitive trend’ previously observed along a broad environmental gradient accounts for woody alien naturalization when considering a single mesic ecosystem; or (ii) more than one trait syndrome is important among alien species, which would be more in line with the context‐dependent nature of biological invasions at a local scale. Fifteen vegetative and regenerative traits were measured on the most common 14 native and 11 alien woody species. We compared the attributes of (i) native and alien species and (ii) between native species and two contrasting groups of alien species identified in the previous analysis. The overall trait comparison (i) showed that, in terms of vegetative attributes, woody alien species tend to be on average more acquisitive than native species. However, (ii) two contrasting syndromes were revealed among alien species: a group of seven deciduous species with acquisitive attributes; and a group of four evergreen species showing markedly more conservative attributes than the first group. The functional attributes of ‘conservative aliens’ completely overlapped with the range observed for native species, except for an exclusive dispersal phenology and a stronger tendency to clonal spread. Acquisitive aliens, in turn, proved to be beyond the range of attributes of native species, at the acquisitive extreme, as they did in previous comparisons. Despite their importance, general trends in plant functional attributes across regions and ecosystems can sometimes obscure trends at more local scales that are nevertheless important for the understanding and management of particular systems. Our study concurs with previous general trends when looking at the overall comparison between native and alien species, but unveils contrasting functional strategies among alien species when examining their attributes more closely, even within the same ecosystem.