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991.
Facilitation in plant communities: the past, the present, and the future 总被引:24,自引:11,他引:24
Rob W. Brooker Fernando T. Maestre Ragan M. Callaway Christopher L. Lortie Lohengrin A. Cavieres Georges Kunstler Pierre Liancourt Katja Tielbörger Justin M. J. Travis Fabien Anthelme Cristina Armas Lluis Coll Emmanuel Corcket Sylvain Delzon Estelle Forey Zaal Kikvidze Johan Olofsson Francisco Pugnaire Constanza L. Quiroz Patrick Saccone Katja Schiffers Merav Seifan Blaize Touzard Richard Michalet 《Journal of Ecology》2008,96(1):18-34
992.
William J. Sutherland Rosalind Aveling Thomas M. Brooks Mick Clout Lynn V. Dicks Liz Fellman Erica Fleishman David W. Gibbons Brandon Keim Fiona Lickorish Kathryn A. Monk Diana Mortimer Lloyd S. Peck Jules Pretty Johan Rockström Jon Paul Rodríguez Rebecca K. Smith Mark D. Spalding Femke H. Tonneijck Andrew R. Watkinson 《Trends in ecology & evolution》2014
993.
Louise Ilum Sørensen Juha Mikola Minna-Maarit Kytöviita Johan Olofsson 《Ecosystems》2009,12(5):830-842
Mammal grazing is composed of three mechanisms—removal of foliar tissue (defoliation), return of nutrients via dung and urine
(fertilization), and trampling. To evaluate the relative role of these mechanisms in the effect of reindeer grazing on soil
biota in northern grasslands, we subjected experimental plots in a sub-arctic alpine meadow to defoliation, fertilization
(using NPK-solution), simulated trampling, and their factorial combinations once a year from 2002 to 2004 and measured the
response of plants and decomposers (including microbes, nematodes, collembolans, and enchytraeids) in 2004. Trampling affected
both plant and decomposer communities: the coverage of the moss Pleurozium schreberi and the sedge Carex vaginata, as well as the abundance of collembolans and enchytraeids were reduced in trampled plots. Trampling and fertilization also
interacted significantly, with fertilization increasing the abundance of bacteria and bacterial-feeding and omnivorous nematodes
in trampled plots only, and trampling decreasing fungal biomass in non-fertilized plots only. Defoliation had no overall effects
on plants or decomposers. Nematode genera were not affected by the experimental treatments, but nematode and plant communities
were significantly associated, and all decomposer biota, except collembolans, were strongly affected by the spatial heterogeneity
of the study site. Our results indicate that trampling may have larger and defoliation and fertilization smaller roles than
anticipated in explaining reindeer grazing effects in sub-arctic grasslands. However, even the effects of trampling seem to
be outweighed by the spatial heterogeneity of decomposer abundances. This suggests that in sub-arctic grasslands spatial variation
in abiotic factors can be a more important factor than grazing in controlling soil biota abundances.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.
Author contributions LIS was involved in planning of the study, fieldwork, lab work, analysis, and wrote the article with contributions from all
other authors; JM and MMK conceived the study and contributed to the data analyses; MMK further contributed to the field work
and JM refined the final appearance of the text; JO started and was responsible for managing the field experiment, collecting
the plant data and gave advice on statistical analysis. 相似文献
994.
Farrah T Deutsch EW Omenn GS Campbell DS Sun Z Bletz JA Mallick P Katz JE Malmström J Ossola R Watts JD Lin B Zhang H Moritz RL Aebersold R 《Molecular & cellular proteomics : MCP》2011,10(9):M110.006353
Human blood plasma can be obtained relatively noninvasively and contains proteins from most, if not all, tissues of the body. Therefore, an extensive, quantitative catalog of plasma proteins is an important starting point for the discovery of disease biomarkers. In 2005, we showed that different proteomics measurements using different sample preparation and analysis techniques identify significantly different sets of proteins, and that a comprehensive plasma proteome can be compiled only by combining data from many different experiments. Applying advanced computational methods developed for the analysis and integration of very large and diverse data sets generated by tandem MS measurements of tryptic peptides, we have now compiled a high-confidence human plasma proteome reference set with well over twice the identified proteins of previous high-confidence sets. It includes a hierarchy of protein identifications at different levels of redundancy following a clearly defined scheme, which we propose as a standard that can be applied to any proteomics data set to facilitate cross-proteome analyses. Further, to aid in development of blood-based diagnostics using techniques such as selected reaction monitoring, we provide a rough estimate of protein concentrations using spectral counting. We identified 20,433 distinct peptides, from which we inferred a highly nonredundant set of 1929 protein sequences at a false discovery rate of 1%. We have made this resource available via PeptideAtlas, a large, multiorganism, publicly accessible compendium of peptides identified in tandem MS experiments conducted by laboratories around the world. 相似文献
995.
Fractions of three trypsin-like proteinases, TL I, TL II, and TL III, a chymotrypsin-like proteinase, CL, two carboxypeptidase A enzymes, CPA I and CPA II and two carboxypeptidase B enzymes, CPB I and CPB II, from Antarctic krill (Euphausia superba) have been characterized with respect to purity by the means of capillary electrophoresis, CE, and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). The masses of the trypsin-like and chymotrypsin-like proteinases were determined to be 25,020, 25,070, 25,060, and 26,260Da for TL I, TL II, TL III, and CL, respectively. The masses of the CPA enzymes are likely 23,170 and 23,260Da, whereas the CPB enzyme masses likely are 33,730 and 33,900Da. The degradation efficiency and cleavage pattern of the trypsin-like proteinases were studied with native myoglobin as a model substrate using CE, MALDI-TOF-MS, and nanoelectrospray mass spectrometry (nESI-MS). The degradation efficiency of the trypsin-like proteinases was found to be approximately 12 and 60 times higher compared to bovine trypsin at 37 degrees C and 1-3 degrees C, respectively. All three fractions of trypsin-like proteinases showed a carboxypeptidase activity in combination with their trypsin activity. 相似文献
996.
997.
Johanna Blomqvist Thomas Eberhard Johan Schnürer Volkmar Passoth 《Applied microbiology and biotechnology》2010,87(4):1487-1497
The influence of pH, temperature and carbon source (glucose and maltose) on growth rate and ethanol yield of Dekkera bruxellensis was investigated using a full-factorial design. Growth rate and ethanol yield were lower on maltose than on glucose. In controlled
oxygen-limited batch cultivations, the ethanol yield of the different combinations varied from 0.42 to 0.45 g (g glucose)−1 and growth rates varied from 0.037 to 0.050 h−1. The effect of temperature on growth rate and ethanol yield was negligible. It was not possible to model neither growth rate
nor ethanol yield from the full-factorial design, as only marginal differences were observed in the conditions tested. When
comparing three D. bruxellensis strains and two industrial isolates of Saccharomyces cerevisiae, S. cerevisiae grew five times faster, but the ethanol yields were 0–13% lower. The glycerol yields of S. cerevisiae strains were up to six-fold higher compared to D. bruxellensis, and the biomass yields reached only 72–84% of D. bruxellensis. Our results demonstrate that D. bruxellensis is robust to large changes in pH and temperature and may have a more energy-efficient metabolism under oxygen limitation
than S. cerevisiae. 相似文献
998.
Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector 总被引:1,自引:0,他引:1
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Herein we present Gene-Collector, a method for multiplex amplification of nucleic acids. The procedure has been employed to successfully amplify the coding sequence of 10 human cancer genes in one assay with uniform abundance of the final products. Amplification is initiated by a multiplex PCR in this case with 170 primer pairs. Each PCR product is then specifically circularized by ligation on a Collector probe capable of juxtapositioning only the perfectly matched cognate primer pairs. Any amplification artifacts typically associated with multiplex PCR derived from the use of many primer pairs such as false amplicons, primer-dimers etc. are not circularized and degraded by exonuclease treatment. Circular DNA molecules are then further enriched by randomly primed rolling circle replication. Amplification was successful for 90% of the targeted amplicons as seen by hybridization to a custom resequencing DNA micro-array. Real-time quantitative PCR revealed that 96% of the amplification products were all within 4-fold of the average abundance. Gene-Collector has utility for numerous applications such as high throughput resequencing, SNP analyses, and pathogen detection. 相似文献
999.
Keyaerts E Vijgen L Maes P Neyts J Van Ranst M 《Biochemical and biophysical research communications》2004,323(1):264-268
We report on chloroquine, a 4-amino-quinoline, as an effective inhibitor of the replication of the severe acute respiratory syndrome coronavirus (SARS-CoV) in vitro. Chloroquine is a clinically approved drug effective against malaria. We tested chloroquine phosphate for its antiviral potential against SARS-CoV-induced cytopathicity in Vero E6 cell culture. Results indicate that the IC50 of chloroquine for antiviral activity (8.8 +/- 1.2 microM) was significantly lower than its cytostatic activity; CC50 (261.3 +/- 14.5 microM), yielding a selectivity index of 30. The IC50 of chloroquine for inhibition of SARS-CoV in vitro approximates the plasma concentrations of chloroquine reached during treatment of acute malaria. Addition of chloroquine to infected cultures could be delayed for up to 5h postinfection, without an important drop in antiviral activity. Chloroquine, an old antimalarial drug, may be considered for immediate use in the prevention and treatment of SARS-CoV infections. 相似文献