Statistical inference of the time-varying structure of gene-regulation networks

Background  

Biological networks are highly dynamic in response to environmental and physiological cues. This variability is in contrast to conventional analyses of biological networks, which have overwhelmingly employed static graph models which stay constant over time to describe biological systems and their underlying molecular interactions.     

The effect of changes in muscle function and bone growth on muscle migration

The elastic sleeve model of the periosteum of a long bone presents the periosteum as a structure which, because it is attached to the epiphyses rather than the diaphysis, expands interstitially and equally at all points as the bone grows at its ends. Structures attached to the periosteum are seen as essentially passive hitchhikers on the expanding periosteum. Two corollaries of this model are tested here. First, that changes in the magnitude or direction of the force that an attached structure exerts on the periosteum do not affect the migration of the structure. Second, that changes in the proportion of growth that occur at each end of the bone do not affect the migration of attached structures. Experiments performed on rabbits to test these corollaries include muscle paralysis, muscle transection, changes in the direction pull of a muscle, and epiphysiodesis. The results are in agreement with the hypotheses. This model should have applicability to functional and comparative anatomy, since it postulates that differences in positions of attachment of muscles and ligaments to bones reflect underlying genetic differences (phylogeny) rather than the effects of differences in behavior of the animal (ontogeny).     

Heterozygosity and craniofacial dimensions of Zapotec school children from a subsistence community in the valley of Oaxaca, southern Mexico

Gene flow is associated with differences in craniofacial and postcranial dimensions among indigenous populations of southern Mexico. This study compares four craniofacial dimensions in 322 children from families which have an average inbreeding coefficient of 0.01 and 36 children from families which have an inbreeding coefficient of zero (more heterozygous) in a Zapotec speaking community. In addition, two indices were computed. With sex and chronological age constant, there is a statistically significant difference between more and less heterozygous children in bizygomatic diameter. Differences in biparietal diameter and fronto-occipital length reflect the same tendency. The differences probably reflect more an effect of heterozygosity on these dimensions than facial dissimilarity of the populations from which the new genetic materials were drawn because gene flow was from related groups of Indians (e.g., Mixtec) in southern Mexico. Hence, midface growth and overall normal size appear to be affected by fluctuation in level of heterozygosity.     

Sexual dimorphism in mandibular growth of French-Canadian children 6 to 10 years of age

Polynomial regression is used to model the mandibular growth of 28 girls and 26 boys who were followed longitudinally from 6 to 10 years of age. The pooled-within individual designs indicate that ramus height follows a linear pattern of size increase; corpus and total mandibular lengths display curvilineal, decelerating, patterns of growth over the age range. Multivariate analyses of variance reveal significant sex differences in size, favoring boys, for the two length measures at 6 years of age. Growth velocity for corpus length is also significantly greater in boys than in girls. Sexual dimorphism in the growth of total mandibular length is more complex, including differences in velocity and deceleration. Ramus height shows no significant pattern of variation between boys and girls for either size or growth velocity.     

Socioeconomic variation in estimated growth velocity of schoolchildren from a rural, subsistence agricultural community in southern Mexico

Socioeconomic variation in estimated growth velocities (annual growth increments) of several anthropometric dimensions was considered in schoolchildren from a rural, subsistence agricultural community in the Valley of Oaxaca in southern Mexico. The children (114 males, 99 females), 6-13 years of age, were measured twice, approximately one year apart. Annual growth increments were computed by subtracting measurements taken in the fall of 1978 from those taken in the fall of 1979. Information on household land holdings and appliances and parental occupation was used to compute an index of socioeconomic status (SES). Analysis of annual increments among upper SES (65 males, 45 females) and lower (49 males, 54 females) children indicated negligible differences. The results suggest that growth deficits evident in the children at school age occurred in infancy and early childhood so that there was little, if any, SES variation in growth rate at the school ages.     

A craniofacial growth maturity gradient for males and females between 4 and 16 years of age

Differential growth of the craniofacial complex implies variation in ontogenetic patterns of development. This investigation quantifies the relative maturity—as defined by percent adult status—of nine cephalometric dimensions and stature. Analysis is based on 663 lateral cephalograms from a mixed longitudinal sample of 26 males and 25 females between 4 and 16 years of age. Graphic comparison of maturity status across the age range shows that variation is intergraded between the neural and somatic growth maturity patterns, as described by head height and stature, respectively. The maturity gradient moves from head height through anterior cranial base, posterior cranial base and maxillary length, upper facial height, corpus length, and ramus height to stature. After 9 years of age ramus height is less mature than stature. Anterior maxillary and mandibular heights diminish during transitional dentition and thereafter exhibit maturity patterns that compare to corpus length. Although females are consistently more mature than males, the gradient of variation between dimensions is sex independent.