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931.
Yusuke Ohnishi Yasushi Totoki Atsushi Toyoda Toshiaki Watanabe Yasuhiro Yamamoto Katsushi Tokunaga Yoshiyuki Sakaki Hiroyuki Sasaki Hirohiko Hohjoh 《Nucleic acids research》2010,38(15):5141-5151
Recent studies showed that small interfering RNAs (siRNAs) and Piwi-interacting RNA (piRNA) in mammalian germ cells play important roles in retrotransposon silencing and gametogenesis. However, subsequent contribution of those small RNAs to early mammalian development remains poorly understood. We investigated the expression profiles of small RNAs in mouse metaphase II oocytes, 8–16-cell stage embryos, blastocysts and the pluripotent inner cell mass (ICM) using high-throughput pyrosequencing. Here, we show that during pre-implantation development a major small RNA class changes from retrotransposon-derived small RNAs containing siRNAs and piRNAs to zygotically synthesized microRNAs (miRNAs). Some siRNAs and piRNAs are transiently upregulated and directed against specific retrotransposon classes. We also identified miRNAs expression profiles characteristic of the ICM and trophectoderm (TE) cells. Taken together, our current study reveals a major reprogramming of functional small RNAs during early mouse development from oocyte to blastocyst. 相似文献
932.
Takaharu Yamamoto Junko Mochida Jun Kadota Miyoko Takeda Erfei Bi Kazuma Tanaka 《Molecular biology of the cell》2010,21(7):1237-1252
The assembly of filamentous actin is essential for polarized bud growth in budding yeast. Actin cables, which are assembled by the formins Bni1p and Bnr1p, are thought to be the only actin structures that are essential for budding. However, we found that formin or tropomyosin mutants, which lack actin cables, are still able to form a small bud. Additional mutations in components for cortical actin patches, which are assembled by the Arp2/3 complex to play a pivotal role in endocytic vesicle formation, inhibited this budding. Genes involved in endocytic recycling were also required for small-bud formation in actin cable-less mutants. These results suggest that budding yeast possesses a mechanism that promotes polarized growth by local recycling of endocytic vesicles. Interestingly, the type V myosin Myo2p, which was thought to use only actin cables to track, also contributed to budding in the absence of actin cables. These results suggest that some actin network may serve as the track for Myo2p-driven vesicle transport in the absence of actin cables or that Myo2p can function independent of actin filaments. Our results also show that polarity regulators including Cdc42p were still polarized in mutants defective in both actin cables and cortical actin patches, suggesting that the actin cytoskeleton does not play a major role in cortical assembly of polarity regulators in budding yeast. 相似文献
933.
Naoki Yamamoto Koji Hirano Hajime Kojima Mariko Sumitomo Hiromi Yamashita Masahiko Ayaki Koki Taniguchi Atsuhiro Tanikawa Masayuki Horiguchi 《In vitro cellular & developmental biology. Animal》2010,46(9):774-780
Stem/progenitor cells of the human corneal epithelium are present in the human corneal limbus, and several corneal epithelial
stem/progenitor cell markers have been reported. Recently, the neurotrophin family receptors were reported to be useful markers
of corneal epithelial stem/progenitor cells. Therefore, we examined an enzymatic separation method for obtaining corneal epithelial
stem/progenitor cells and measuring the change in the expression of low-affinity neurotrophin receptor p75 (p75NTR), a receptor belonging to the neurotrophin family. As a result, it was found that our separation method preserved cell viability.
Furthermore, p75NTR was mainly observed in epithelial basal cells as were the corneal epithelial stem/progenitor markers p63 and integrin β1.
p75NTR was also observed in the cultured cells, but its frequency decreased with passage. In conclusion, we propose that our culture
method will enable the culture of corneal stem cells and that it is a useful tool for elucidating the molecular basis of the
niche that is necessary for the maintenance of epithelial stem cells in the corneal limbus. Furthermore, we conclude that
p75NTR is a useful cell marker for evaluating the characteristics of stem/progenitor cells in culture. 相似文献
934.
Misfolded glycoproteins are translocated from endoplasmic reticulum (ER) into the cytosol for proteasome-mediated degradation. A mannose-6-phosphate receptor homology (MRH) domain is commonly identified in a variety of proteins and, in the case of OS-9 and XTP3-B, is involved in glycoprotein ER-associated degradation (ERAD). Trimming of outermost α1,2-linked mannose on C-arm of high-mannose-type glycan and binding of processed α1,6-linked mannosyl residues by the MRH domain are critical steps in guiding misfolded glycoproteins to enter ERAD. Here we report the crystal structure of a human OS-9 MRH domain (OS-9(MRH)) complexed with α3,α6-mannopentaose. The OS-9(MRH) has a flattened β-barrel structure with a characteristic P-type lectin fold and possesses distinctive double tryptophan residues in the oligosaccharide-binding site. Our crystallographic result in conjunction with nuclear magnetic resonance (NMR) spectroscopic and biochemical results provides structural insights into the mechanism whereby OS-9 specifically recognizes Manα1,6Manα1,6Man residues on the processed C-arm through the continuous double tryptophan (WW) motif. 相似文献
935.
Taoka H Yamamoto Y Sakurai N Fukuda M Asakawa Y Kurasaki A Oharaseki T Kubushiro K 《Human cell》2010,23(4):126-133
We compared the detection rate of cervical neoplasias between a liquid-based cytology (LBC) method using SurePath and the conventional method. We also studied the feasibility of human papillomavirus (HPV) typing by linear array assay. Cytological specimens from 1551 Japanese women were prepared using the conventional and SurePath methods; the cytological and histological results from biopsy samples were compared. HPV typing using an HPV linear array assay was carried out on residual specimens using the SurePath method. The cytodiagnostic results showed a concordance rate of 85.3% (Κ= 0.46) between the two methods. The sensitivity of lesions histopathologically diagnosed as CIN1 or above was not significantly different between the two methods (P = 0.575-1.000). The receiver operating characteristic curve analysis of the detectability in CIN2 or above revealed no significant difference between the two methods (P = 0.096). Among the 44 patients who underwent HPV typing using a linear array assay, 33 samples were eligible for HPV testing and were stored at ambient temperature. In conclusion, the SurePath and conventional methods have equivalent abilities for detecting cervical lesions. After preparation for cytological diagnosis, use of the remaining cells from the SurePath specimens to perform HPV typing using the linear array method could be feasible. 相似文献
936.
Sen Qiao Taichi Yamamoto Motoki Misaka Kazuichi Isaka Tatsuo Sumino Zafar Bhatti Kenji Furukawa 《Biodegradation》2010,21(1):11-20
In this study, combination of a partial nitritation reactor, using immobilized polyethylene glycol (PEG) gel carriers, and
a continuous stirred granular anammox reactor was investigated for nitrogen removal from livestock manure digester liquor.
Successful nitrite accumulation in the partial nitritation reactor was observed as the nitrite production rate reached 2.1 kg-N/m3/day under aerobic nitrogen loading rate of 3.8 kg-N/m3/day. Simultaneously, relatively high free ammonia concentrations (average 50 mg-NH3/l) depressed the activity of nitrite oxidizing bacteria with nitrate concentration never exceeding 3% of TN concentration
in the effluent of the partial nitritation reactor (maximum 35.2 mg/l). High nitrogen removal rates were achieved in the granular
anammox reactor with the highest removal rate being 3.12 kg-N/m3/day under anaerobic nitrogen loading rate of 4.1 kg-N/m3/day. Recalcitrant organic compounds in the digester liquor did not impair anammox reaction and the SS accumulation in the
granular anammox reactor was minimal. The results of this study demonstrated that partial nitritation–anammox combination
has the potential to successfully remove nitrogen from livestock manure digester liquor. 相似文献
937.
Atsuzawa K Nakazawa A Mizutani K Fukasawa M Yamamoto N Hashimoto T Usuda N 《Histochemistry and cell biology》2010,134(6):565-579
The presence of a mitochondrial fatty acid β-oxidation system in the retina was shown by immunohistochemistry. Fatty acids
are considered to serve as a major energy source metabolized by fatty acid β-oxidation together with glucose metabolized by
glycolysis in the organs of the entire body, but almost nothing is known about this metabolic system in the retina. Adult
rat retinae were subjected to immunofluorescence and immuno-electron microscopy for the localization of fatty acid β-oxidation
enzymes, together with western blot analysis for quantitation of the amount of enzyme proteins and DNA microarray analysis
for gene expression. All the enzymes examined were shown to be present in the retina, but in small amounts, with the amount
of protein and gene expression in the retina being about 1/10 of those in the liver. Immunohistochemistry at light and electron
microscopic levels revealed the enzymes to be more preferentially localized to the mitochondria of Müller cells than the retinal
neurons. The Müller cells were isolated from the retina and confirmed for the presence of mitochondrial fatty acid β-oxidation
enzymes. A mitochondrial fatty acid β-oxidation system was thus shown to be present in the retina heterogeneously. 相似文献
938.
Tomomichi Chonan Hiroaki Tanaka Daisuke Yamamoto Miyoko Yashiro Takahiro Oi Daisuke Wakasugi Ayumi Ohoka-Sugita Fusayo Io Hiroko Koretsune Akira Hiratate 《Bioorganic & medicinal chemistry letters》2010,20(13):3965-3968
Acetyl-CoA carboxylases (ACCs), the rate limiting enzymes in de novo lipid synthesis, play important roles in modulating energy metabolism. The inhibition of ACC has demonstrated promising therapeutic potential for treating obesity and type 2 diabetes mellitus in transgenic mice and preclinical animal models. We describe herein the structure-based design and synthesis of a novel series of disubstituted (4-piperidinyl)-piperazine derivatives as ACC inhibitors. Our structure-based approach led to the discovery of the indole derivatives 13i and 13j, which exhibited potent in vitro ACC inhibitory activity. 相似文献
939.
940.
In rice, light is known to inhibit the growth of coleoptiles and seminal roots of seedlings through phytochrome. Here we investigated the light-induced growth inhibition of seminal roots and compared the results with those recently determined for coleoptiles. Although three rice phytochromes, phyA, phyB and phyC functioned in a similar manner in coleoptile and seminal root, the Bunsen-Roscoe law of reciprocity was not observed in the growth inhibition of seminal root. We also found coiling of the seminal root at the root tip which appeared to be associated with the photoinhibition of seminal root growth. This could be a new light-induced phenomenon in certain cultivars of rice.Key words: growth, hypocotyl, Oryza sativa, phytochrome, seminal rootPhytochrome-mediated growth inhibition was reported for both coleoptiles and seminal roots of rice seedlings in the same year by two research groups in Nagoya and Tohoku University in Japan, respectively.1,2 Forty years after the findings, a detailed photobiological study was carried out for the coleoptile growth inhibition.3 In this study, we examined photoinhibition of seminal root growth, and found similarities and differences between light-induced growth inhibition of the two organs in rice seedlings. Although coleoptile growth was inhibited by pulses of light, growth inhibition of seminal roots required light irradiation longer than 6 h. The Bunsen-Roscoe law of reciprocity was not observed in the growth inhibition of seminal root. Action spectra were determined for the growth inhibition of coleoptiles, and the mode of inhibition was found to depend on the age of the coleoptiles. At the early stage of development [40 h after inducing germination (AIG)], photoinhibition was predominantly due to the phyB-mediated low-fluence response (LFR), but at the late developmental stage (80 h AIG), it consisted of the phyA-mediated very low-fluence response (VLFR) as well as the phyB-mediated LFR.3,4 In the case of root growth, the sensitivity of photoinhibition also depended on age, and was most sensitive in the period of 48–96 h AIG when seedlings were irradiated for 24 h. Using rice phytochrome mutants,5 we found that far-red light for root growth inhibition was perceived exclusively by phyA, that red light was perceived by both phyA and phyB, and that phyC had little or no role in growth inhibition. Furthermore, the fluence rate required for phyB-mediated inhibition was more than 10,000-fold greater than that required for phyA-mediated inhibition. These characteristics of photoinhibition in seminal roots are similar to those found in coleoptiles at the late stage of development.3 In seminal roots, photoinhibition appeared to be mediated by photoreceptors in the root itself.Interestingly, coiling of the root tips always occurred when root growth was inhibited under the light condition (Fig. 1B). Under continuous light irradiation, rice seeds germinated ∼30 h AIG. Seminal roots formed a coil at the root tips during the 48–96 h period AIG, and stopped growing. When they were irradiated for only 24 h on the 3rd day AIG, coils started to form just after the end of irradiation. The roots continued to coil for ∼28 h and then began growing straight again (Fig. 1C). The coils were larger and looser than those formed under continuous light condition (Fig. 1, Open in a separate windowFigure 1Light irradiation induces coiling of root tips in rice seedlings (Oryza sativa cv. Nipponbare). A rice seedling was grown in the dark (A), or in continuous white light (55 µole m−2 s−1) (B) for 7 d at 28°C. In (C), it was irradiated by white light for 24 h during the 48–72 h period after inducing germination, and kept in the dark again until the 7th day. Arrows and arrowheads indicate the seminal and crown roots, respectively. Seedlings were grown in glass tubes of 3-cm diameter.
Open in a separate window* Mean and SD of 4-7 seedlings.We also found that light exposure had an opposite effect on the growth of the seminal and crown roots of rice seedlings. Light inhibited the growth of seminal roots, whereas it promoted the growth of crown roots. In fact, light was found to promote growth of Arabidopsis primary roots, in which phyA and phyB were found to be responsible for photoperception as well as photosynthetic activity.6 In rice seedlings, growth orientation of the crown roots is also affected by light exposure, whereas growth orientation of the seminal roots is controlled solely by the gravity vector. The crown roots grow in a horizontal direction in the dark, while they grow toward the gravity vector in the light.7 The contrasting responses to light in the seminal and crown roots are likely to help the transition of rice seedlings from the embryonic root system, in which the seminal roots are predominant, to the fibrous root system, which contains numerous crown roots. 相似文献
Table 1
The size of coil of root tips formed after white light irradiationLight irradiation | Diameter* (mm) | Length* (mm) | Number of turns* |
Continuous irradiation for 7 d | 1.96 ± 0.41 | 2.70 ± 0.63 | 4.6 ± 0.8 |
24 h-long irradiation during the 48–72 h period after inducing germination | 2.60 ± 0.44 | 3.33 ± 0.19 | 2.3 ± 0.5 |