Structural genes of glutamate 1-semialdehyde aminotransferase for porphyrin synthesis in a cyanobacterium and Escherichia coli

Summary In bacteria 5-aminolevulinate, the universal precursor in the biosynthesis of the porphyrin nucleus of hemes, chlorophylls and bilins is synthesised by two different pathways: in non-sulphur purple bacteria (Rhodobacter) or Rhizobium 5-aminolevulinate synthase condenses glycine and succinyl-CoA into 5-aminolevulinate as is the case in mammalian cells and yeast. In cyanobacteria, green and purple sulphur bacteria, as in chloroplasts of higher plants and algae a three step pathway converts glutamate into 5-aminolevulinate. The last step is the conversion of glutamate 1-semialdehyde into 5-aminolevulinate. Using a cDNA clone encoding glutamate 1-semialdehyde aminotransferase from barley, genes for this enzyme were cloned from Synechococcus PCC6301 and Escherichia coli and sequenced. The popC gene of E. coli, previously considered to encode 5-aminolevulinate synthase, appears to be a structural gene for glutamate 1-semialdehyde aminotransferase. Domains with identical amino acid sequences comprise 48% of the primary structure of the barley, cyanobacterial and putative E. coli glutamate 1-semialdehyde aminotransferases. The cyanobacterial and barley enzymes share 72% identical residues. The peptide containing a likely pyridoxamine phosphate binding lysine is conserved in all three protein sequences.     

Capacity of siderophore — producing alkalophilic bacteria to accumulate iron,gallium and aluminum

Summary The ability of alkalophilic bacteria to remove iron, gallium and aluminium from culture media is reported. Of six bacterial strains grown in the presence of iron, gallium or aluminium (10 M), five were able to accumulate iron or gallium, but only two depleted the aluminium stock. A comparison of gallium removal under low (< 1 gmM) or high (10 gmM) iron conditions showed that two isolates accumulated gallium only under low-Fe conditions. One isolate, a coryneform bacterium, was able to grow in the presence of 1, 10 and 100 mg gallium/l, but growth and siderophore production were affected at high gallium concentration. Similar concentrations of gallium were accumulated from cultures initially containing 1 or 100 mg gallium/l. Offsprint requests to: D. J. Gascoyne     

Inhibition of rabbit lung angiotensin-converting enzyme by N alpha-[(S)-1-carboxy-3-phenylpropyl]L-alanyl-L-proline and N alpha-[(S)-1-carboxy-3-phenylpropyl]L-lysyl-L-proline

Two novel peptide analogs, N alpha-[(S)-1-carboxy-3-phenylpropyl]L-alanyl-L-proline and the corresponding L-lysyl-L-proline derivative, have been demonstrated to be potent competitive inhibitors of purified rabbit lung angiotensin-converting enzyme: Ki = 2 and 1 X 10(-10) M, respectively, at pH 7.5, 25 degrees C, and 0.3 M chloride ion. Second-order rate constants for addition of these inhibitors to enzyme under the same conditions are in the range 1-2 X 10(6) M-1 s-1; first-order rate constants for dissociation of the EI complexes are in the range 1-4 X 10(-4) s-1. The association rate constants are similar to those measured for D-3-mercapto-2-methylpropanoyl-L-proline, captopril, but the dissociation rate constants are severalfold slower and account for the higher affinity of these inhibitors for the enzyme. The dissociation constant for the EI complex containing N alpha-[(S)-1-carboxy-3-phenylpropyl]L-alanyl-L-proline is pH-dependent, and reaches a minimum at approximately pH 6: Ki = 4 +/- 1 X 10(-11) M. The pH dependence is consistent either with a model for which the protonation state of the secondary nitrogen atom in the inhibitor determines binding affinity, or one for which ionizations on the enzyme alone influence affinity for these inhibitors. The affinity of this inhibitor for the zinc-free apoenzyme is 2 X 10(4) times less than for the zinc-free apoenzyme is 2 X 10(4) times less than that for the holoenzyme. If considered as a "collected product" inhibitor, N alpha-[(S)-1-carboxy-3-phenylpropyl]L-alanyl-L-proline appears to derive an additional factor of 375 M in its affinity for the enzyme compared to that of the two products of its hypothetical hydrolysis, a consequence of favorable entropy effects.     

A note on the characterization of an estuarine microbial community enriched with the herbicide Fenuron

M inney , S.F., P arkes , R.J. & B ull , A.T. 1985. A note on the characterization of an estuarine microbial community enriched with the herbicide Fenuron. Journal of Applied Bacteriology 59 , 17—22.
A stable, five-membered estuarine microbial community was enriched in the presence of 1,1 dimethyl-3-phenylurea (Fenuron), phenylurea and aniline. At a dilution rate of 0μD01/h in the chemostat, partial aniline utilization occurred and the rate increased with dilution rate. At the higher dilution rates the phenylurea component was also utilized. At a dilution rate of mD015/h in a fluidized bed system, complete removal of both aniline and phenylurea occurred. There was no evidence of Fenuron degradation under any of the conditions examined. The importance of the use of heterogeneous culture conditions in the laboratory is discussed.     

Distribution and abundance of coral plankton

High densities of eggs and larvae of scleractinian corals were found in plankton samples after mass, multi-specific spawnings on inshore high island fringing reefs in the central Great Barrier Reef region. Immediately after spawning, vertical stratification was observed with eggs concentrated on the surface. Larvae were found to be distributed vertically and horizontally within 12 hours of spawning. Larval development over the subsequent 6–7 days was associated with an increase in the length/width ratios of larvae and their volumes. Influxes of mature larvae onto the study reef were observed 3–6 days after spawning. The relative success of the sampling in relation to other reports in the literature, and the future for more informed work on the larval ecology of corals are discussed.     

Isolation and characterization of a haloalkane halidohydrolase from Rhodococcus erythropolis Y2

Rhodococcus erythropolis strain Y2, isolated from soil by enrichment culture using 1-chlorobutane, was able to utilize a range of halogenated aliphatic compounds as sole sources of carbon and energy. The ability to utilize 1-chlorobutane was conferred by a single halidohydrolase-type haloalkane dehalogenase. The presence of the single enzyme in cell-free extracts was demonstrated by activity strain polyacrylamide gel electrophoresis. The purified enzyme was a monomeric protein with a relative molecular mass of 34 kDa and demonstrated activity against a broad range of haloalkanes, haloalcohols and haloethers. The highest activity was found towards alpha, omega disubstituted chloro- and bromo- C2-C6 alkanes and 4-chlorobutanol. The Km value of the enzyme for 1-chlorobutane was 0.26 mM. A comparison of the R. erythropolis Y2 haloalkane halidohydrolase with other haloalkane dehalogenases is discussed on the basis of biochemical properties and N-terminal amino acid sequence data.