Snapshot prediction of carbon productivity,carbon and protein content in a Southern Ocean diatom using FTIR spectroscopy

Diatoms, an important group of phytoplankton, bloom annually in the Southern Ocean, covering thousands of square kilometers and dominating the region''s phytoplankton communities. In their role as the major food source to marine grazers, diatoms supply carbon, nutrients and energy to the Southern Ocean food web. Prevailing environmental conditions influence diatom phenotypic traits (for example, photophysiology, macromolecular composition and morphology), which in turn affect the transfer of energy, carbon and nutrients to grazers and higher trophic levels, as well as oceanic biogeochemical cycles. The paucity of phenotypic data on Southern Ocean phytoplankton limits our understanding of the ecosystem and how it may respond to future environmental change. Here we used a novel approach to create a ‘snapshot'' of cell phenotype. Using mass spectrometry, we measured nitrogen (a proxy for protein), total carbon and carbon-13 enrichment (carbon productivity), then used this data to build spectroscopy-based predictive models. The models were used to provide phenotypic data for samples from a third sample set. Importantly, this approach enabled the first ever rate determination of carbon productivity from a single time point, circumventing the need for time-series measurements. This study showed that Chaetoceros simplex was less productive and had lower protein and carbon content during short-term periods of high salinity. Applying this new phenomics approach to natural phytoplankton samples could provide valuable insight into understanding phytoplankton productivity and function in the marine system.     

Early food production in Africa

The study of early food production in sub-Saharan Africa is at least as challenging as it is rewarding. Problems arise in large degree from the scarcity of relevant archeological material, particularly the remains of domesticated plants from prehistoric sites. This is attributable to several factors, including poor preservation, difficulties in recovering such material, and the limited amount of work so far invested in obtaining it. But, problems notwithstanding, fresh data and new methodological approaches have revealed aspects of early African food production that are interesting in themselves, as well as in global perspective. For example, contrary to what occurred in most other parts of the world, livestock herding in Africa often predated the earliest evidence of cultivation of domesticated plants. Moreover, the initial spread of food production throughout much of sub-Saharan Africa was accompanied by iron, rather than lithic, technology. This overview of current knowledge about early African food production is aimed at highlighting developmental patterns while also exposing limitations in our understanding of these patterns. Because of Africa's vast size, uniform coverage in reasonable depth of all parts of the continent is not possible. Thus, for example, I will not explicitly cover the complex neolithic record from Africa's Mediterranean region. Instead, I will generally concentrate on bodies of data and lines of investigation that characterize distinctive features of the African version of initial steps in raising crops and animals.     

Multiple Phenotypic Changes Associated with Large-Scale Horizontal Gene Transfer

Horizontal gene transfer often leads to phenotypic changes within recipient organisms independent of any immediate evolutionary benefits. While secondary phenotypic effects of horizontal transfer (i.e., changes in growth rates) have been demonstrated and studied across a variety of systems using relatively small plasmids and phage, little is known about the magnitude or number of such costs after the transfer of larger regions. Here we describe numerous phenotypic changes that occur after a large-scale horizontal transfer event (∼1 Mb megaplasmid) within Pseudomonas stutzeri including sensitization to various stresses as well as changes in bacterial behavior. These results highlight the power of horizontal transfer to shift pleiotropic relationships and cellular networks within bacterial genomes. They also provide an important context for how secondary effects of transfer can bias evolutionary trajectories and interactions between species. Lastly, these results and system provide a foundation to investigate evolutionary consequences in real time as newly acquired regions are ameliorated and integrated into new genomic contexts.