Biology of the microsporidan parasite Pleistophora crangoni n. sp. in three species of crangonid sand shrimps

The microsporidium Pleistophora crangoni n. sp. is a common parasite of Crangon franciscorum, C. nigricauda, and C. stylirostris in the vicinity of Yaquina Bay, Oregon. Characteristics of the parasite are described. Skeletal muscle was the only host tissue infected. The seasonal prevalence and intensity of the parasite in crangonids are described, based on examination of 1556 C. franciscorum, 3877 C. nigricauda, and 1674 C. stylirostris collected at monthly intervals from June 1975 through June 1976. Prevalence in C. franciscorum and C. stylirostris increased through the autumn and reached winter peaks of 30.3 and 41.0%, respectively, then decreased in the spring. Prevalence in C. nigricauda remained below 8% through the year. Intensity increased with size of the shrimps in the three species. Infection experiments and field observations suggest that only very young shrimps are susceptible to infection during a relatively short period during the summer months. Following natural infection, the parasite spreads within the host, indicating repeated schizogonic cycles. Parasitic castration was indicated by the absence of gravid infected female shrimps and was confirmed by histological examination. Ovaries of infected shrimps did not develop beyond a very early stage. A shift in sex ratio toward females in infected shrimps indicates that the parasite may influence sex determination. Shrimps showed little cellular response to infection. Only rarely in heavily infected shrimps was encapsulation of parasite cysts observed; necrotic tissue was occasionally observed. Infected shrimps usually succumbed before uninfected shrimps when subjected to oxygen stress. The collection of infected shrimps that were unusually large may indicate that these individuals grew faster or lived longer than uninfected shrimps.     

Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains.

Src homology 2 (SH2) regions are short (approximately 100 amino acids), non-catalytic domains conserved among a wide variety of proteins involved in cytoplasmic signaling induced by growth factors. It is thought that SH2 domains play an important role in the intracellular response to growth factor stimulation by binding to phosphotyrosine containing proteins. In this paper we apply the techniques of multiple sequence alignment, secondary structure prediction and conservation analysis to 67 SH2 domain amino acid sequences. This combined approach predicts seven core secondary structure regions with the pattern beta-alpha-beta-beta-beta-beta-alpha, identifies those residues most likely to be buried in the hydrophobic core of the native SH2 domain, and highlights patterns of conservation indicative of secondary structural elements. Residues likely to be involved in phosphotyrosine binding are shown and orientations of the predicted secondary structures suggested which could enable such residues to cooperate in phosphate binding. We propose a consensus pattern that encapsulates the principal conserved features of the SH2 domains. Comparison of the proposed SH2 domain of akt to this pattern shows only 12/40 matches, suggesting that this domain may not exhibit SH2-like properties.     

A soil archaeal community responds to a decade of ecological restoration

Large‐scale restoration efforts are underway globally to mitigate the impact of decades of land degradation by returning functional and biodiverse ecosystems. Revegetation is a heavily relied upon restoration intervention, and one that is expected to result in associated biodiversity returns. However, the outcome of such restoration interventions rarely considers recovery to the soil microbiome, a mega‐diverse and functionally important ecosystem component. Here we examine the archaeal component of the soil microbiome and track community change after a decade of eucalypt woodland restoration in southern Australia. We employed DNA metabarcoding to show that archaeal community composition, richness, and diversity shifted significantly, and towards a restored state 10 years after the restoration intervention. Changes in soil pH and nitrate associated with changes to the archaeal community, potentially relating to the pH responsive properties and close relationship with the nitrogen cycle of some archaea. Our study helps shed light on archaeal community dynamics, as no other study has used DNA metabarcoding to study archaeal responses across a restoration chronosequence. Our results provide great promise for the development of molecular monitoring of the soil microbiome as a future restoration monitoring tool.     

The Distribution of Henipaviruses in Southeast Asia and Australasia: Is Wallace’s Line a Barrier to Nipah Virus?

Nipah virus (NiV) (Genus Henipavirus) is a recently emerged zoonotic virus that causes severe disease in humans and has been found in bats of the genus Pteropus. Whilst NiV has not been detected in Australia, evidence for NiV-infection has been found in pteropid bats in some of Australia’s closest neighbours. The aim of this study was to determine the occurrence of henipaviruses in fruit bat (Family Pteropodidae) populations to the north of Australia. In particular we tested the hypothesis that Nipah virus is restricted to west of Wallace’s Line. Fruit bats from Australia, Papua New Guinea, East Timor and Indonesia were tested for the presence of antibodies to Hendra virus (HeV) and Nipah virus, and tested for the presence of HeV, NiV or henipavirus RNA by PCR. Evidence was found for the presence of Nipah virus in both Pteropus vampyrus and Rousettus amplexicaudatus populations from East Timor. Serology and PCR also suggested the presence of a henipavirus that was neither HeV nor NiV in Pteropus alecto and Acerodon celebensis. The results demonstrate the presence of NiV in the fruit bat populations on the eastern side of Wallace’s Line and within 500 km of Australia. They indicate the presence of non-NiV, non-HeV henipaviruses in fruit bat populations of Sulawesi and Sumba and possibly in Papua New Guinea. It appears that NiV is present where P. vampyrus occurs, such as in the fruit bat populations of Timor, but where this bat species is absent other henipaviruses may be present, as on Sulawesi and Sumba. Evidence was obtained for the presence henipaviruses in the non-Pteropid species R. amplexicaudatus and in A. celebensis. The findings of this work fill some gaps in knowledge in geographical and species distribution of henipaviruses in Australasia which will contribute to planning of risk management and surveillance activities.     

Size and sex matter: reproductive biology and determinants of offspring survival in Gazella marica

For prey, many behavioural traits are constrained by the risk of predation. Therefore, shifts between warning and cryptic coloration have been suggested to result in parallel changes in several behaviours. In the present study, we tested whether changes in chromatic contrast among eight populations of the strawberry poison‐dart frog, Dendrobates pumilio, co‐vary with behaviour, as expected if selection is imposed by predators relying on visual detection of prey. These eight populations are geographically isolated on different island in the Bocas del Toro region of Panama and have recently diverged morphologically and genetically. We found that aggression and explorative behaviour were strongly correlated and also that males tended to be more aggressive and explorative if they belonged to populations with conspicuously coloured individuals. We discuss how evolutionary switches between predator avoidance strategies and associated behavioural divergence between populations may affect reproductive isolation. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ●● , ●●–●●.     

MTH1 Substrate Recognition—An Example of Specific Promiscuity

MTH1 (NUDT1) is an oncologic target involved in the prevention of DNA damage. We investigate the way MTH1 recognises its substrates and present substrate-bound structures of MTH1 for 8-oxo-dGTP and 8-oxo-rATP as examples of novel strong and weak binding substrate motifs. Investigation of a small set of purine-like fragments using 2D NMR resulted in identification of a fragment with weak potency. The protein-ligand X-Ray structure of this fragment provides insight into the role of water molecules in substrate selectivity. Wider fragment screening by NMR resulted in three new protein structures exhibiting alternative binding configurations to the key Asp-Asp recognition element of the protein. These inhibitor binding modes demonstrate that MTH1 employs an intricate yet promiscuous mechanism of substrate anchoring through its Asp-Asp pharmacophore. The structures suggest that water-mediated interactions convey selectivity towards oxidized substrates over their non-oxidised counterparts, in particular by stabilization of a water molecule in a hydrophobic environment through hydrogen bonding. These findings may be useful in the design of inhibitors of MTH1.     

Juvenile hormone and aggression in honey bees

We determined whether defense by individual bees against non-nestmates in honey bees (Apis mellifera) is correlated with their juvenile hormone (JH) titers, which are known to vary developmentally and seasonally. We bioassayed winter and summer bees for aggressive and non-aggressive individuals. Bees in winter could not be distinguished by task group, but bees in summer were segregated into nurses and guards. JH titers were correlated with aggressive behavior at two levels. First, winter bees and summer nurses, known to have lower JH titers, both showed less aggression toward foreign bees than did summer guards. Second, aggressive individuals had significantly higher JH titers than did non-aggressive bees within each colony. Inter-colonial variation in aggressiveness was maintained during summer and winter, suggesting a genetic basis for these differences. An alarm pheromone test further substantiated the existence of inter-colonial differences. We found significant variation in JH titers among different colonies, but this variation was not significantly associated with colony-level aggressiveness. The correlation between JH and levels of aggressiveness within a colony suggests a regulatory role for JH, but variation among colonies involves factors other than JH.