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11.
The effects of Mg(2+) concentration on the kinetics of both ATP cleavage and carboxyenzyme formation in the approach to steady state of the biotin carboxylation reaction of pyruvate carboxylase have been studied. It was found that the enzyme underwent dilution inactivation at low Mg(2+) concentrations and that this occurred at higher enzyme concentrations than had been previously observed. At 10 mM Mg(2+), dilution inactivation was prevented and activation of the enzyme also occurred. When the enzyme was mixed with an ATP solution to initiate the carboxylation reaction, dilution inactivation was reversed and further enzyme activation was induced to a final level that was dependent on Mg(2+) concentration. With the exception of the reaction at 10 mM Mg(2+) in the presence of acetyl CoA, the experimental data could be adequately described as first-order exponential approaches to steady state. At 10 mM Mg(2+) in the presence of acetyl CoA, both ATP cleavage and carboxyenzyme formation data were best described as a biexponential process, in which there was little ATP turnover at steady state. Modeling studies have been performed which produced simulated data that were similar to the experimental data, using a reaction scheme modified from one proposed previously [Legge, G. B., et al. (1996) Biochemistry 35, 3849-3856]. These studies indicate that the major foci of action of Mg(2+) are in the decarboxylation of the enzyme-carboxybiotin complex, the return of the biotin to the site of the biotin carboxylation reaction, and the coupling of ATP cleavage to biotin carboxylation. 相似文献
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Branson DH 《Environmental entomology》2008,37(3):686-695
The complex interplay between grasshoppers, weather conditions, and plants that cause fluctuations in grasshopper populations remains poorly understood, and little is known about the ecological processes that generate grasshopper outbreaks. Grasshopper populations respond to interacting extrinsic and intrinsic factors, with yearly and decadal weather patterns and the timing of precipitation all potentially important. The effects of initial and increasing grasshopper densities on grasshopper survival and reproductive correlates were examined at a northern mixed-grass prairie site through manipulations of grasshopper densities inside 10-m2 cages. High-quality grass growth occurred after a 9.1-cm mid-August rain. Reduced proportional survival was apparent in the two higher density treatments before the rain, indicative of food-limited density-dependent mortality. However, the large late summer rainfall event mediated the effects of exploitative competition on demographic characteristics because of the high-quality vegetation growth. This led to weaker effects of food limitation on survival and reproduction at the end of the experiment. The results indicate a direct link between weather variation, resource quality and grasshopper population dynamics led to a severe grasshopper outbreak and show that infrequent large precipitation events can have significant effects on population dynamics. Additional research is needed to examine the importance of infrequent large precipitation events on grasshopper population dynamics in grassland ecosystems. 相似文献
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Herman Branson 《Bulletin of mathematical biology》1942,4(3):131-137
The behavior of the diffusion coefficient of a solute which can be adsorbed by a colloid only after the colloid has aggregated
to a certain size is deduced on the basis of a few assumptions. Some relations of such a mechanism to cell reactions are indicated. 相似文献
18.
Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage 总被引:10,自引:0,他引:10
The similarity of two nucleotide sequences is often expressed in terms of
evolutionary distance, a measure of the amount of change needed to
transform one sequence into the other. Given two sequences with a small
distance between them, can their similarity be explained by their base
composition alone? The nucleotide order of these sequences contributes to
their similarity if the distance is much smaller than their average
permutation distance, which is obtained by calculating the distances for
many random permutations of these sequences. To determine whether their
similarity can be explained by their dinucleotide and codon usage, random
sequences must be chosen from the set of permuted sequences that preserve
dinucleotide and codon usage. The problem of choosing random dinucleotide
and codon-preserving permutations can be expressed in the language of graph
theory as the problem of generating random Eulerian walks on a directed
multigraph. An efficient algorithm for generating such walks is described.
This algorithm can be used to choose random sequence permutations that
preserve (1) dinucleotide usage, (2) dinucleotide and trinucleotide usage,
or (3) dinucleotide and codon usage. For example, the similarity of two
60-nucleotide DNA segments from the human beta-1 interferon gene
(nucleotides 196-255 and 499-558) is not just the result of their nonrandom
dinucleotide and codon usage.
相似文献
19.
Herman Branson 《Bulletin of mathematical biology》1946,8(4):159-165
An integral equation is established applicable to many types of metabolizing systems. The equation is applied to first order chemical reactions and to some biological systems. 相似文献
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