Direct analysis of the mini-exon donor RNA of Trypanosoma brucei: detection of a novel cap structure also present in messenger RNA.

The mini-exon, a short segment found at the 5' end of trypanosome mRNAs, is contributed by a small RNA, the mini-exon donor (medRNA). In vivo 32P-labeled medRNA, a set of smaller RNAs related to it, and mRNA, were purified from Trypanosoma brucei by hybrid selection and gel electrophoresis. Using RNA fingerprinting and sequencing techniques, mini-exon oligonucleotides were identified and characterized. We detected a novel 5' terminal capped oligonucleotide present in both medRNA and mRNA. This structure contained m7G and at least four modified nucleotides, not identified previously. If the T. brucei mini-exon has exactly four transcribed nucleotides upstream from its originally designated 5' end, it would begin with the sequence: m7GpppA*A*C*U*AA*CG (asterisks denote modification) and medRNA would be 140 nucleotides long, excluding the m7G residue. The mini-exon contains, and retains during its transfer to mRNA, a novel 5' terminal structure whose presence could confer unique functional attributes.     

Tenacity and shell shape in six Patella species: Adaptive features

Measurements were made of te forces necessary to detach various South African Patella spp. These ranged from 5.18 to 1.95 kg/cm², with significant differences between the species. P. cochlear Born. had the highest value, followed in sequence by P. argenvillei Kr., longicosta Lam., P. granularis L., P. granatina L., and P. oculus Born. Adhesion is the only mechanism capable of providing forces of this magnitude.Differences between the species are related to differences in their morphology, high tenacity being associated with low mucus secretion, small number of mucocytes, and inflexibility of the foot. This is associated with a large area of muscle attachment on the shell and the size of basal haemocoelic spaces.Features favouring high tenacity conflict with those favouring mobility, and the limpets fall into two groups. P. granularis, P. oculus, and P. granatina occur on the upper shore and the last two usually occur in areas which are sheltered from strong wave action. They a rapid growth and high gonadal output, demanding extensive foraging and hence mobility at the cost of tenacity. P. cochlear and P. longicosta are territorial and together with P. argenvillei, remain low on the shore, grow slowly, and have a low reproductive output. Feeding is localized and mobility sacrificed for high tenacity which is essential in P. cochlear and P. argenvillei as they occur in areas of strong wave action.Shell height is not correlated with tenacity nor with the intensity of wave action normally experienced by each species, but P. cochlear, P. argenvillei and to a lesser extent P. granularis, are subjected to strong wave action and have proportionally narrower shells (increasing streamlining) and low coefficients of drag. The latter are low due to the rough but regular texture of the shells creating a turbulent boundary layer and hence reducing drag.     

A comparison of the pulmonary, renal and hepatic extractions of PGI2 and PGE2 - PGI2 a potential circulating hormone.

Prostaglandin (PG) I₂ and PGE₂ were infused into the aortic arch, femoral vein, renal artery and portal vein in anesthetized dogs over a dose range to produce a steady decrease in systemic blood pressure after 10 mins infusion. Parallel log dose-response relationships were observed with both PGI₂ and PGE₂. PGE₂ was a more potent depressor than PGI₂ when infused into the aortic arch. The doses to reduce blood pressure by 5 mm Hg were used to calculate the extraction of the compounds by the lungs, kidney and liver. The pulmonary extraction of PGE₂ was 96 ± 2% and was essentially complete following combined pulmonary and renal or pulmonary and hepatic extraction. In contrast, there was no significant pulmonary extraction of PGI₂. Combined renal and pulmonary extraction was 43 ± 11% and combined hepatic and pulmonary extraction 87 ± 5%. These results indicate a marked difference in the organ metabolising capacity for PGE₂ and PGI₂. Since PGI₂ has been shown to be produced both in the kidney and stomach it is possible that PGI₂ produced endogenously could pass into the circulation and exert systemic pharmacological effects.     

Lipid and Surface Wax Synthesis in Water-stressed Cotton Leaves

The incorporation of [2-¹⁴C]malonate and [1-¹⁴C]acetate into internal lipid and surface wax by cotton leaves (Gossypium hirsutum L. `Deltapine') having water potentials of −8 to −15 bars (controls) and −19 to −32 bars (water-stressed) was compared. Lipid from stressed leaves contained a mean of 57% more radioactivity than corresponding controls for five experiments. Acetyl coenzyme A carboxylase was not limiting to fatty acid synthesis in water-stressed cotton leaves at the water potential levels tested, whereas fatty acid synthetase was stimulated. In four of six experiments, wax from stressed leaves contained a mean of 38% less radioactivity than nonstressed leaves when incubated 24 hours after rehydration. Evidence is presented to show that after a suitable period of rehydration, previously stressed cotton leaves produce more wax than leaves prior to stressing.     

Effect of PGI2, PGE2 and 6-keto PGF1α on canine gastric blood flow and acid secretion

Prostaglandins (PG)I₂, PGE₂ and 6-keto PGF₁α were infused directly into the gastric arterial supply at 10⁻⁹, 10⁻⁸ and 10⁻⁷ g/kg/min during an intra-gastric artery pentagastrin infusion in anesthetized dogs. 6-keto PGF₁α was also infused at 10⁻⁶ g/kg/min. Gastric arterial blood flow was measured continuously with a non-cannulating electromagnetic flow probe and gastric acid collected directly from the stomach. PGI₂ and PGE₂ produced similar dose-dependent increases in blood flow with an increase of more than four-fold at the highest dose. Both PGs inhibited acid output over this dose range with PGE₂ having 10 times the potency of PGI₂. 6-keto PGF₁α was at least 1000 times less active than PGI₂ or PGE₂ at increasing blood flow and failed to inhibit acid output even at 10⁻⁶ g/kg/min.     

A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication

RNA structures play key roles in the replication of RNA viruses. Sequence alignment software, thermodynamic RNA folding programs, and classical comparative phylogenetic analysis were used to build models of six RNA elements in the coding region of the hepatitis C virus (HCV) RNA-dependent RNA polymerase, NS5B. The importance of five of these elements was evaluated by site-directed mutagenesis of a subgenomic HCV replicon. Mutations disrupting one of the predicted stem-loop structures, designated 5BSL3.2, blocked RNA replication, implicating it as an essential cis-acting replication element (CRE). 5BSL3.2 is about 50 bases in length and is part of a larger predicted cruciform structure (5BSL3). As confirmed by RNA structure probing, 5BSL3.2 consists of an 8-bp lower helix, a 6-bp upper helix, a 12-base terminal loop, and an 8-base internal loop. Mutational analysis and structure probing were used to explore the importance of these features. Primary sequences in the loops were shown to be important for HCV RNA replication, and the upper helix appears to serve as an essential scaffold that helps maintain the overall RNA structure. Unlike certain picornavirus CREs, whose function is position independent, 5BSL3.2 function appears to be context dependent. Understanding the role of 5BSL3.2 and determining how this new CRE functions in the context of previously identified elements at the 5' and 3' ends of the RNA genome should provide new insights into HCV RNA replication.     

The sulfogalactose moiety of sulfoglycosphingolipids serves as a mimic of tyrosine phosphate in many recognition processes. Prediction and demonstration of Src homology 2 domain/sulfogalactose binding

Multiple ligand co-recognition of 3'-sulfogalactosylceramide (SGC) and sulfotyrosine initiated the comparison of SGC and sulfotyrosine and, subsequently, phosphotyrosine (pY) binding. SGC is a receptor for ligands involved in cell adhesion/microbial pathology. pY forms a Src homology domain 2 recognition motif in intracellular signaling. Using hsp70, anti-SGC, and anti-pY antibodies, ligand binding is retained following phosphate/sulfate and tyrosine/galactose substitution in SGC and sulfate/phosphate exchange in pY. Remarkable lipid-dependent binding to phosphatidylethanolamine-conjugated sulfotyrosine suggests "microenvironmental" modulation of sulfotyrosine-containing receptors, similar to glycosphingolipids. Based on an aryl substrate-bound co-crystal of arylsulfatase A, a sulfogalactose and phosphotyrosine esterase, modeling provides a solvation basis for co-recognition. c-Src/Src homology domain 2:SGC/phosphogalactosylceramide binding confirms our hypothesis, heralding a carbohydrate-based approach to regulation of phosphotyrosine-mediated recognition.     

Ascospore linearity in the four-spored ascus ofNeurospora tetrasperma

The four-spored ascus ofNeurospora tetrasperma is linearly ordered, i.e. the order of the ascospores within the linear ascus directly reflects preceding meiotic events. This conclusion is based upon the finding of only two types of arrangements of homokaryotic ascospores in asci showing second division segregation and the failure to find any of the other four theoretically possible types of homokaryotic arrangements. The data are also consistent with the regular occurrence of nuclear passing at both the second and third meiotic divisions during ascus development. This work was supported by Public Health Service Grant GM 10672. Supported in part by Public Health Service Training Grant 5-T1-GM-767-05.