Focus on Ethylene: Ethylene and Hormonal Cross Talk in Vegetative Growth and Development

Ethylene is a gaseous plant hormone that most likely became a functional hormone during the evolution of charophyte green algae, prior to land colonization. From this ancient origin, ethylene evolved into an important growth regulator that is essential for myriad plant developmental processes. In vegetative growth, ethylene appears to have a dual role, stimulating and inhibiting growth, depending on the species, tissue, and cell type, developmental stage, hormonal status, and environmental conditions. Moreover, ethylene signaling and response are part of an intricate network in cross talk with internal and external cues. Besides being a crucial factor in the growth control of roots and shoots, ethylene can promote flowering, fruit ripening and abscission, as well as leaf and petal senescence and abscission and, hence, plays a role in virtually every phase of plant life. Last but not least, together with jasmonates, salicylate, and abscisic acid, ethylene is important in steering stress responses.This Update provides recent insights into the role of ethylene on vegetative growth, both at the cellular and the whole-plant levels, with special attention to hormonal cross talk. Due to space restrictions, this Update is mainly focused on Arabidopsis (Arabidopsis thaliana).     

A model-driven approach to quantify migration patterns: individual, regional and yearly differences

1.?Animal migration has long intrigued scientists and wildlife managers alike, yet migratory species face increasing challenges because of habitat fragmentation, climate change and over-exploitation. Central to the understanding migratory species is the objective discrimination between migratory and nonmigratory individuals in a given population, quantifying the timing, duration and distance of migration and the ability to predict migratory movements. 2.?Here, we propose a uniform statistical framework to (i) separate migration from other movement behaviours, (ii) quantify migration parameters without the need for arbitrary cut-off criteria and (iii) test predictability across individuals, time and space. 3.?We first validated our novel approach by simulating data based on established theoretical movement patterns. We then formulated the expected shapes of squared displacement patterns as nonlinear models for a suite of movement behaviours to test the ability of our method to distinguish between migratory movement and other movement types. 4.?We then tested our approached empirically using 108 wild Global Positioning System (GPS)-collared moose Alces alces in Scandinavia as a study system because they exhibit a wide range of movement behaviours, including resident, migrating and dispersing individuals, within the same population. Applying our approach showed that 87% and 67% of our Swedish and Norwegian subpopulations, respectively, can be classified as migratory. 5.?Using nonlinear mixed effects models for all migratory individuals we showed that the distance, timing and duration of migration differed between the sexes and between years, with additional individual differences accounting for a large part of the variation in the distance of migration but not in the timing or duration. Overall, the model explained most of the variation (92%) and also had high predictive power for the same individuals over time (69%) as well as between study populations (74%). 6.?The high predictive ability of the approach suggests that it can help increase our understanding of the drivers of migration and could provide key quantitative information for understanding and managing a broad range of migratory species.     

Comparison of the host specificities of two bacteroidales quantitative PCR assays used for tracking human fecal contamination

The sewage-associated real-time quantitative PCR (qPCR) assays BacHum and HF183 SYBR were compared for specificity against local fecal sources. Both assays were equally sensitive to sewage, but BacHum showed substantially more false-positive results for cat, dog, gull, and raccoon feces.     

Long distance dispersal of zooplankton endemic to isolated mountaintops--an example of an ecological process operating on an evolutionary time scale

Recent findings suggest a convergence of time scales between ecological and evolutionary processes which is usually explained in terms of rapid micro evolution resulting in evolution on ecological time scales. A similar convergence, however, can also emerge when slow ecological processes take place on evolutionary time scales. A good example of such a slow ecological process is the colonization of remote aquatic habitats by passively dispersed zooplankton. Using variation at the protein coding mitochondrial COI gene, we investigated the balance between mutation and migration as drivers of genetic diversity in two Branchipodopsis fairy shrimp species (Crustacea, Anostraca) endemic to remote temporary rock pool clusters at the summit of isolated mountaintops in central South Africa. We showed that both species colonized the region almost simultaneously c. 0.8 My ago, but exhibit contrasting patterns of regional genetic diversity and demographic history. The haplotype network of the common B. cf. wolfi showed clear evidence of 11 long distance dispersal events (up to 140 km) with five haplotypes that are shared among distant inselbergs, as well as some more spatially isolated derivates. Similar patterns were not observed for B. drakensbergensis presumably since this rarer species experienced a genetic bottleneck. We conclude that the observed genetic patterns reflect rare historic colonization events rather than frequent ongoing gene flow. Moreover, the high regional haplotype diversity combined with a high degree of haplotype endemicity indicates that evolutionary- (mutation) and ecological (migration) processes in this system operate on similar time scales.     

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

Despite improvements in terms of sequence quality and price per basepair, Sanger sequencing remains restricted to screening of individual disease genes. The development of massively parallel sequencing (MPS) technologies heralded an era in which molecular diagnostics for multigenic disorders becomes reality. Here, we outline different PCR amplification based strategies for the screening of a multitude of genes in a patient cohort. We performed a thorough evaluation in terms of set-up, coverage and sequencing variants on the data of 10 GS-FLX experiments (over 200 patients). Crucially, we determined the actual coverage that is required for reliable diagnostic results using MPS, and provide a tool to calculate the number of patients that can be screened in a single run. Finally, we provide an overview of factors contributing to false negative or false positive mutation calls and suggest ways to maximize sensitivity and specificity, both important in a routine setting. By describing practical strategies for screening of multigenic disorders in a multitude of samples and providing answers to questions about minimum required coverage, the number of patients that can be screened in a single run and the factors that may affect sensitivity and specificity we hope to facilitate the implementation of MPS technology in molecular diagnostics.     

Spatiotemporal dynamics of duck harvest distributions in the Central and Mississippi flyways, 1960–2019

Geographical distributions of waterfowl exhibit annual variation in response to spatiotemporal variation in weather conditions, habitat availability, and other factors. Continuing changes in climate and land use could lead to persistent shifts of waterfowl distributions, potentially causing a mismatch with habitat conservation planning, wetland restoration efforts, and harvest management decisions informed by historical distributions. We used band recoveries and harvest records (i.e., hunter-harvested wings) from the United States Fish and Wildlife Service Waterfowl Parts Collection Survey as indices of duck distribution in autumn and winter, and quantified intra-annual, interannual, and interspecific variation in their geographic distributions across 6 decades (1960–2019) for 15 duck species in the Central and Mississippi flyways in North America. Specifically, we tested for annual and decadal shifts in mean latitude and longitude of recoveries for each month (Oct–Jan) by species and taxonomic guild (i.e., dabbling, diving ducks). Overall, species varied in the extent, timing, and sometimes direction, of distributional change in recoveries. From 1960–2019, mean recovery locations for dabbling ducks shifted south 105–296 km in October and 27 km in November (wings only), whereas mean latitudes shifted north 144–234 km in December and 186–301 km in January. Mean recovery locations for diving ducks shifted north 162 km in October (wings only), 84–173 km in December, and 66–120 km in January, but shifted 99–512 km south in November. Shifts in longitude were less consistent between guilds and data types. Finally, distributional change rarely accelerated during recent decades, except for southward shifts of band recoveries of diving ducks in November and northward shifts of band and wing recoveries of dabbling ducks in January. Although anecdotal accounts of large-scale northward shifts in duck distributions are prolific in the land management and hunting communities, our data demonstrate more subtle shifts that vary considerably by species and month. Observed changes in recovery distributions could necessitate changes in timing of habitat management practices throughout the Central and Mississippi flyways and may result in fewer hunting and recreational opportunities for some species in southern states. Quantifying patterns of historical change is a necessary first step to understanding temporal and interspecific variation in waterfowl distributions, which will help with landscape-scale conservation and management efforts in the future and enable effective communication to core constituencies regarding ongoing changes and their implications for recreational engagement.     

Interaction effects between sender and receiver processes in indirect transmission of Campylobacter jejuni between broilers

ABSTRACT: BACKGROUND: Infectious diseases in plants, animals and humans are often transmitted indirectly between hosts (or between groups of hosts), i.e. via some route through the environment instead of via direct contacts between these hosts. Here we study indirect transmission experimentally, using transmission of Campylobacter jejuni (C. jejuni) between spatially separated broilers as a model system. We distinguish three stages in the process of indirect transmission; (1) an infectious "sender" excretes the agent, after which (2) the agent is transported via some route to a susceptible "receiver", and subsequently (3) the receiver becomes colonised by the agent. The role of the sender and receiver side (stage 1 and stage 3) was studied here by using acidification of the drinking water as a modulation mechanism. RESULTS: In the experiment one control group and three treatment groups were monitored for the presence of C. jejuni by taking daily cloacal swabs. The three treatments consisted of acidification of the drinking water of the inoculated animals (the senders), acidification of the drinking water of the susceptible animals (the receivers) or acidification of the drinking water of both inoculated and susceptible animals. In the control group 12 animals got colonised out of a possible 40, in each treatment groups 3 animals out of a possible 40 were found colonised with C. jejuni. CONCLUSIONS: The results of the experiments show a significant decrease in transmission rate (beta) between the control group and treatments group (p < 0.01 for all groups) but not between different treatments; there is a significant negative interaction effect when both the sender and the receiver group receive acidified drinking water (p = 0.01). This negative interaction effect could be due to selection of bacteria already at the sender side thereby diminishing the effect of acidification at the receiver side.