Validation of mega-environment universal and specific QTL associated with seed yield and agronomic traits in soybeans

The value of quantitative trait loci (QTL) is dependant on the strength of association with the traits of interest, allelic diversity at the QTL and the effect of the genetic background on the expression of the QTL. A number of recent studies have identified QTL associated with traits of interest that appear to be independent of the environment but dependant on the genetic background in which they are found. Therefore, the objective of this study was to validate universal and/or mega-environment-specific seed yield QTL that have been previously reported in an independent recombinant inbred line (RIL) population derived from the cross between an elite Chinese and Canadian parent. The population was evaluated at two field environments in China and in five environments in Canada in 2005 and 2006. Of the seven markers linked to seed yield QTL reported by our group in a previous study, four were polymorphic between the two parents. No association between seed yield and QTL was observed. The result could imply that seed yield QTL were either not stable in this particular genetic background or harboured different alleles than the ones in the original mapping population. QTL_U Satt162 was associated with several agronomic traits of which lodging was validated. Both the non-adapted and adapted parent contributed favourable alleles to the progeny. Therefore, plant introductions have been validated as a source of favourable alleles that could increase the genetic variability of the soybean germplasm pool and lead to further improvements in seed yield and other agronomic traits.     

Regional and seasonal variation in airborne grass pollen levels between cities of Australia and New Zealand

Although grass pollen is widely regarded as the major outdoor aeroallergen source in Australia and New Zealand (NZ), no assemblage of airborne pollen data for the region has been previously compiled. Grass pollen count data collected at 14 urban sites in Australia and NZ over periods ranging from 1 to 17 years were acquired, assembled and compared, revealing considerable spatiotemporal variability. Although direct comparison between these data is problematic due to methodological differences between monitoring sites, the following patterns are apparent. Grass pollen seasons tended to have more than one peak from tropics to latitudes of 37°S and single peaks at sites south of this latitude. A longer grass pollen season was therefore found at sites below 37°S, driven by later seasonal end dates for grass growth and flowering. Daily pollen counts increased with latitude; subtropical regions had seasons of both high intensity and long duration. At higher latitude sites, the single springtime grass pollen peak is potentially due to a cooler growing season and a predominance of pollen from C₃ grasses. The multiple peaks at lower latitude sites may be due to a warmer season and the predominance of pollen from C₄ grasses. Prevalence and duration of seasonal allergies may reflect the differing pollen seasons across Australia and NZ. It must be emphasized that these findings are tentative due to limitations in the available data, reinforcing the need to implement standardized pollen-monitoring methods across Australasia. Furthermore, spatiotemporal differences in grass pollen counts indicate that local, current, standardized pollen monitoring would assist with the management of pollen allergen exposure for patients at risk of allergic rhinitis and asthma.     

Baeospora occidentalis, a new snowbank agaric from western North America

Baeospora occidentalis is described as a new species associated with melting snow in montane coniferous forests of the western USA. The species is spring-fruiting and is characterized by a long tapering pseudorhiza covered with white basal rhizomorphs which extends deeply into the needle litter or woody debris. It possesses a multiallelic, tetrapolar mating system. Monokaryotic mycelia produce arthroconidia.     

Genome Sequence of Stenotrophomonas maltophilia PML168, Which Displays Baeyer-Villiger Monooxygenase Activity

Stenotrophomonas maltophilia PML168 was isolated from Wembury Beach on the English Coast from a rock pool following growth and selection on agar plates. Here we present the permanent draft genome sequence, which has allowed prediction of function for several genes encoding enzymes relevant to industrial biotechnology, including a novel flavoprotein monooxygenase.     

Effects of habitat,season, and age on winter fat storage by migrant and resident birds in Jamaica

Most small birds wintering in the tropics should show little subcutaneous fat deposition (SFD), except in habitats where food availability may decline in late winter or, for some resident species, to prepare for incubation or brooding fasts. However, these predictions need re‐examination in light of a new, precise, cross‐validated method to compare SFD among habitats and species. We sampled 170 Nearctic‐Neotropical migrant and 279 resident birds during early and late winter in 1993 and 1994 in Jamaica, West Indies. Habitats, from greatest to least expected availability of insect prey, were (1) mangrove forest, (2) montane/foothills forest and cultivation, (3) dry limestone forest, and (4) acacia scrub. Percent lipid, estimated from multiple‐regression models using visual fat scoring (0–8 scale), total‐body electrical conductivity, and a variety of morphometrics, was categorized by percentile ranks to determine if SFD varied by habitat, season, or age for all species, resident species, migrant species, and several individual species. SFD averaged ~ 13% total mass for all birds, ranging from 8–24% for well‐sampled species. The few bird species in acacia scrub, primarily two facultative long‐distance migrants, averaged ~ 26% lipid content, significantly more than birds in other habitats. Most birds did not vary in SFD in the other three habitats, although Common Yellowthroats (Geothlypis trichas) had greater SFD in dry limestone habitat than in montane habitat. Bananaquits (Coereba flaveola) and Jamaican Euphonias (Euphonia jamaica) in montane habitat, especially in early winter, had higher SFD than other resident species. Contrary to our prediction, adults and juveniles had similar SFD, with the exception of juveniles having more SFD than adults in acacia scrub habitat. Winter fat deposition (or, in some cases, muscle‐protein catabolism) in the tropics may be an overlooked strategy, potentially important as a hedge against fasting for floaters, facultative migrants, some territorial migrants in habitats with seasonal declines in food resources, and some resident species prior to breeding.     

Quantification of phosphatidic acid and lysophosphatidic acid by HPLC with evaporative light-scattering detection

Phosphatidic acid (PA) and lysophosphatidic acid (LPA) are lipids that regulate cellular processes. PA stimulates kinases and may play a role in exocytosis and membrane fusion. LPA can induce cell proliferation, platelet aggregation, and microfilament formation. Due to the growing interest in these lipids, rapid purification and quantification of these lipids is desirable. We now describe a method that utilizes one HPLC run to separate trace amounts of PA and LPA from large amounts of lipids found in cellular extracts. A two-pump HPLC with a solvent system consisting of chloroform, methanol, water, and ammonium hydroxide was employed to produce a reliable, efficient purification of the two lipids. Lipid mass was quantified by a sensitive evaporative light-scattering detector. Using this new method, insulin addition increased both PA (87%) and LPA (217%) mass in Xenopus laevis oocytes.     

Prevalence and Predictors of Major Depression in HIV-Infected Patients on Antiretroviral Therapy in Bamenda, a Semi-Urban Center in Cameroon

Recent blue-ribbon panel reports have concluded that HIV treatment programs in less wealthy countries must integrate mental health identification and treatment into normal HIV clinical care and that research on mental health and HIV in these settings should be a high priority. We assessed the epidemiology of depression in HIV patients on antiretroviral therapy in a small urban setting in Cameroon by administering a structured interview for depression to 400 patients consecutively attending the Bamenda Regional Hospital AIDS Treatment Center. One in five participants met lifetime criteria for MDD, and 7% had MDD within the prior year. Only 33% had ever spoken with a health professional about depression, and 12% reported ever having received depression treatment that was helpful or effective. Over 2/3 with past-year MDD had severe or very severe episodes. The number of prior depressive episodes and the number of HIV symptoms were the strongest predictors of past-year MDD. The prevalence of MDD in Cameroon is as high as that of other HIV-associated conditions, such as tuberculosis and Hepatitis B virus, whose care is incorporated into World Health Organization guidelines. The management of depression needs to be incorporated in HIV-care guidelines in Cameroon and other similar settings.