Coordination of Polymerization, Chain Termination, and Export in Assembly of the Escherichia coli Lipopolysaccharide O9a Antigen in an ATP-binding Cassette Transporter-dependent Pathway

The Escherichia coli O9a O-polysaccharide (O-PS) is a prototype for O-PS synthesis and export by the ATP-binding cassette transporter-dependent pathway. Comparable systems are widespread in Gram-negative bacteria. The polymannose O9a O-PS is assembled on a polyisoprenoid lipid intermediate by mannosyltransferases located at the cytoplasmic membrane, and the final polysaccharide chain length is determined by the chain terminating dual kinase/methyltransferase, WbdD. The WbdD protein is tethered to the membrane via a C-terminal region containing amphipathic helices located between residues 601 and 669. Here, we establish that the C-terminal domain of WbdD plays an additional pivotal role in assembly of the O-PS by forming a complex with the chain-extending mannosyltransferase, WbdA. Membrane preparations from a ΔwbdD mutant had severely diminished mannosyltransferase activity in vitro, and no significant amounts of the WbdA protein are targeted to the membrane fraction. Expression of a polypeptide comprising the WbdD C-terminal region was sufficient to restore both proper localization of WbdA and mannosyltransferase activity. In contrast to WbdA, the other required mannosyltransferases (WbdBC) are targeted to the membrane independent of WbdD. A bacterial two-hybrid system confirmed the interaction of WbdD and WbdA and identified two regions in the C terminus of WbdD that contributed to the interaction. Therefore, in the O9a assembly export system, the WbdD protein orchestrates the critical localization and coordination of activities involved in O-PS chain extension and termination at the cytoplasmic membrane.Lipopolysaccharide (LPS)³ is a glycolipid unique to the outer membranes of Gram-negative bacteria. LPS has three structural domains in most bacteria (1). Hydrophobic lipid A is a major component of the outer leaflet of the outer membrane. A short core oligosaccharide (OS) serves as a linker between lipid A and a repeat unit polymer termed the O-polysaccharide (O-PS; O-antigen). The structure of lipid A is conserved among Gram-negative bacteria, whereas limited variability is observed among the core OSs of a given species. For example, five closely related core oligosaccharides have been described for Escherichia coli (2). In contrast, the O-PS structures vary extensively within species. O-PS structural variations include differences in the number and type of sugars in the repeat unit and the nature of the glycosidic linkages within and between repeat units. O-PS variations provide the basis for the O-antigen serotyping system, and there are over 180 O-antigen serogroups proposed for E. coli (3, 4).Lipid A-core OS and O-PS are synthesized independently at the cytoplasmic membrane and are subsequently linked together in the periplasm (reviewed in Ref. 1). O-PS assembly is initiated by transfer of a sugar-1-phosphate from a nucleotide sugar precursor to the 55-carbon lipid acceptor, undecaprenol phosphate. In the majority of E. coli serotypes, the initiating reaction is performed by the GlcNAc:Und-P GlcNAc-1-P transferase, WecA (5, 6). WecA is an integral membrane protein and is also essential for initiating synthesis of the enterobacterial common antigen (7). In E. coli, elongation and export of the undecaprenol-PP-linked intermediate proceeds through one of two fundamentally different O-PS assembly pathways. These pathways have been termed Wzy (polymerase)-dependent and ATP-binding cassette (ABC) transporter-dependent biosynthesis, respectively (reviewed in Ref. 1). In Wzy-dependent O-PS biosynthesis, single repeat units are assembled on the undecaprenol-PP-linked intermediate at the cytoplasmic face of the inner membrane. The lipid-linked repeat units are subsequently reoriented to the periplasm where they are assembled into polysaccharide by a process involving Wzy and a chain length regulator, Wzz. In contrast, in the ABC transporter-dependent pathway, the O-PS is elongated on the undecaprenol-PP-linked intermediate in the cytoplasm by sequential glycosyl transfer. Depending on the system, chain extension is terminated by the addition of a nonreducing terminal residue or by interaction with the ABC transporter (8). Full-length O-PS chains are then translocated across the inner membrane by the ABC transporter. The two O-PS assembly pathways converge at a ligation reaction, which transfers the O-PS from undecaprenol-PP to lipid A-core OS at the periplasmic face of the inner membrane. Once assembled, LPS molecules are shuttled to the outer membrane through a process involving the LptABCDE complex (reviewed in Ref. 9).The polymannose O-PS of E. coli O9a provides a model system for ABC transporter-dependent O-PS biosynthesis. The E. coli O9a PS biosynthesis gene cluster (see Fig. 1A) encodes three GDP-mannose-dependent mannosyltransferases (WbdA, WbdB, and WbdC) that assemble the O-PS on undecaprenol-PP-GlcNAc (10). Structural studies identify terminal capping residues in a number of O-PSs synthesized by the ABC transporter-dependent pathway (11). It has been proposed that the addition of a capping residue to the nonreducing end of the undecaprenol-PP-linked PS serves to regulate O-PS chain length by terminating elongation. In the case of the O9a PS, termination involves methylation and phosphorylation. The chain length of the O9a PS is strictly controlled by the activity of WbdD, and O-PS-substituted LPS molecules expressed on the cell surface exhibit a narrow size distribution. The E. coli O9a WbdD protein contains putative kinase and methyltransferase domains, and these activities have been confirmed in biochemical studies (12). In addition to the role in O-PS chain regulation, methyl and/or phosphoryl modification is required for binding of the O9a PS to the nucleotide-binding component (Wzt) of the ABC transporter (13, 14), a crucial initial step in O-PS export. Unmodified O9a PS does not bind to Wzt, and a wbdD mutant accumulates unmodified polysaccharide in the cytoplasm.Open in a separate windowFIGURE 1.Structure and biosynthesis of the E. coli O9a PS and schematic showing WbdD and mutant derivatives. A, the structure of the O9a PS shows the adaptor region, repeat unit, and terminating residues. The nonreducing end of the O-PS is capped by methylation and phosphorylation, but the nature of the linkage between capping residues and the repeat unit is unknown (11, 12). The O9a-PS biosynthesis and export genes are shown together with the functions of the encoded proteins. B, a linear representation of the wild-type WbdD protein from CWG634 is shown in context with the genomic wbdD mutations in CWG635 and CWG900. The methyltransferase (MTase) and kinase domains are shown within WbdD and have been described previously (12). In CWG635, the chromosomal wbdD ORF was disrupted by replacing a 500-bp SmaI restriction fragment with the aacC1 cassette. A potential ribosomal-binding site, initiation codon, and stop codon are shown and together define an ORF encoding amino acids 501–708 of WbdD. In CWG900, the entire wbdD ORF has been removed from the chromosome. C, a schematic of the truncated WbdD polypeptide derivatives encoded by plasmids used in this study. The numbers shown above the polypeptides refer to amino acid positions in the native WbdD protein. Each polypeptide contained either an N-terminal His₆ tag or the T25 fragment of B. pertussis adenylate cyclase (see plasmids in 15, 16). However, the variability of specific assembly proteins among different biosynthetic systems precludes development of a generalized model for a polysaccharide assembly complex. Here we present data revealing the mechanisms that target the O9a mannosyltransferases to the cytoplasmic membrane and identify essential protein-protein interactions within the biosynthesis complex.     

Novel markers for tying-up in horses by proteomics analysis of equine muscle biopsies

The aim of the study was to identify new biomarkers for acute tying-up in horses. Skeletal muscle biopsies were taken from 3 horses suffering from acute tying-up and 3 healthy horses. We performed 2D gel electrophoresis and mass spectrometry for identification of proteins that are differentially expressed in tying-up. 2D gel electrophoresis of skeletal muscle sequential extracts yielded more than 350 protein spots on each gel, of which 14 were differentially expressed more than two-fold (p < 0.05). In-gel digestion followed by peptide mass fingerprinting enabled identification of three significantly increased proteins: alpha actin, tropomyosin alpha chain and creatine kinase M chain (CKM). CKM was represented by multiple spots probably due to posttranslational modification, one of which appeared to be unique for tying-up. Since changes in the rates of synthesis and degradation of proteins are likely to lead to pathological conditions, identification of differentially expressed proteins in acute tying-up might result in the finding of more specific diagnostic markers and in new hypotheses for the common mechanisms that result in this condition. Our findings point to a specific isoform of CKM as a novel biomarker for tying-up suggesting that altered energy distribution within muscle cells is part of the disease etiology.     

Potential protein markers for nutritional health effects on colorectal cancer in the mouse as revealed by proteomics analysis

It is suggested that colorectal cancer might be prevented by changes in diet, and vegetable consumption has been demonstrated to have a protective effect. Until now, little is known about the effects of vegetable consumption at the proteome level. Therefore, the effect of increased vegetable intake on the protein expression in the colonic mucosa of healthy mice was studied. Aim was to identify the proteins that are differentially expressed by increased vegetable consumption and to discriminate their possible role in the protection against colorectal cancer. Mice were fed four different vegetable diets, which was followed by analysis of total cellular protein from colonic mucosal cells by a combination of 2-DE and MS. We found 30 proteins that were differentially expressed in one or more diets as compared to the control diet. Six could be identified by MALDI-TOF MS: myosin regulatory light chain 2, carbonic anhydrase I, high-mobility group protein 1, pancreatitis-associated protein 3, glyceraldehyde-3-phosphate dehydrogenase and ATP synthase oligomycin sensitivity conferral protein. Alterations in the levels of these proteins agree with a role in the protection against colon cancer. We conclude that these proteins are suitable markers for the health effect of food on cancer. The observed altered protein levels therefore provide support for the protective effects of vegetables against colorectal cancer.     

Microarrays of tumor cell derived proteins uncover a distinct pattern of prostate cancer serum immunoreactivity

The broad characterization of the immune responses elicited by tumors has valuable applications in diagnostics and basic research. We present here the use of microarrays of tumor-derived proteins to profile the antibody repertoire in the sera of prostate cancer patients and controls. Two-dimensional liquid chromatography was used to separate proteins from the prostate cancer cell line LNCaP into 1760 fractions. These fractions were spotted in microarrays on coated microscope slides, and the microarrays were incubated individually with serum samples from 25 men with prostate cancer and 25 male controls. The amount of immunoglobulin bound to each fraction by each serum sample was quantified. Statistical analysis revealed that 38 of the fractions had significantly higher levels of immunoglobulin binding in the prostate cancer samples compared to the controls. Two fractions showed higher binding in the control samples. The significantly higher immunoglobulin reactivity from the prostate cancer samples may reflect a strong immune response to the tumors in the prostate cancer patients. We used multivariate analysis to classify the samples as either prostate cancer or control. In a cross-validation study, recursive partitioning classified the samples with 84% accuracy. A decision tree with two levels of partitioning classified the samples with 98% accuracy. Additional studies will allow further characterization of tumor antigens in prostate cancer and their significance for diagnosis. These results suggest that microarrays of fractionated proteins could be a powerful tool for tumor antigen discovery and cancer diagnosis.     

Weather conditions affect levels of extra-pair paternity in the reed bunting Emberiza schoeniclus

Extra-pair paternity (EPP) is common in many socially monogamous birds, but large variations in frequency of EPP are found both between and within species. Local ecological factors can affect the costs and benefits of extra-pair mating behaviour, and may therefore influence the chance that individuals engage in extra-pair copulations (EPCs). We investigated the effect of weather conditions during the peak fertile period of the female on the levels of EPP in reed buntings Emberiza schoeniclus . The reed bunting is a socially monogamous passerine, with extremely high levels of EPP (50% of offspring in 80% of broods). We found that higher daily minimum temperatures and more rainfall during the peak fertile period were associated with lower proportions of EPP. As during adverse weather conditions individuals have to invest more in self maintenance, we suggest that during long periods of rain the extra-pair mating behaviour of all individuals will be restricted, leading to lower proportions of EPP. During cold mornings, time-consuming activities such as mate guarding are likely to be more strongly affected than less time-consuming activities such as EPCs, leading to higher proportions of EPP.     

Genetic Variation in Vitamin B-12 Content of Bovine Milk and Its Association with SNP along the Bovine Genome

Vitamin B-12 (also called cobalamin) is essential for human health and current intake levels of vitamin B-12 are considered to be too low. Natural enrichment of the vitamin B-12 content in milk, an important dietary source of vitamin B-12, may help to increase vitamin B-12 intake. Natural enrichment of the milk vitamin B-12 content could be achieved through genetic selection, provided there is genetic variation between cows with respect to the vitamin B-12 content in their milk. A substantial amount of genetic variation in vitamin B-12 content was detected among raw milk samples of 544 first-lactation Dutch Holstein Friesian cows. The presence of genetic variation between animals in vitamin B-12 content in milk indicates that the genotype of the cow affects the amount of vitamin B-12 that ends up in her milk and, consequently, that the average milk vitamin B-12 content of the cow population can be increased by genetic selection. A genome-wide association study revealed significant association between 68 SNP and vitamin B-12 content in raw milk of 487 first-lactation Dutch Holstein Friesian cows. This knowledge facilitates genetic selection for milk vitamin B-12 content. It also contributes to the understanding of the biological mechanism responsible for the observed genetic variation in vitamin B-12 content in milk. None of the 68 significantly associated SNP were in or near known candidate genes involved in transport of vitamin B-12 through the gastrointestinal tract, uptake by ileum epithelial cells, export from ileal cells, transport through the blood, uptake from the blood, intracellular processing, or reabsorption by the kidneys. Probably, associations relate to genes involved in alternative pathways of well-studied processes or to genes involved in less well-studied processes such as ruminal production of vitamin B-12 or secretion of vitamin B-12 by the mammary gland.     

Defective paracrine signalling by TGFbeta in yolk sac vasculature of endoglin mutant mice: a paradigm for hereditary haemorrhagic telangiectasia

Hereditary haemorrhagic telangiectasia (HHT) is an autosomal dominant disorder in humans that is characterised by multisystemic vascular dyplasia and recurrent haemorrhage. Germline mutations in one of two different genes, endoglin or ALK1 can cause HHT. Both are members of the transforming growth factor (TGF) beta receptor family of proteins, and are expressed primarily on the surface of endothelial cells (ECs). Mice that lack endoglin or activin receptor like kinase (ALK) 1 die at mid-gestation as a result of defects in the yolk sac vasculature. Here, we have analyzed TGFbeta signalling in yolk sacs from endoglin knockout mice and from mice with endothelial-specific deletion of the TGFbeta type II receptor (TbetaRII) or ALK5. We show that TGFbeta/ALK5 signalling from endothelial cells to adjacent mesothelial cells is defective in these mice, as evidenced by reduced phosphorylation of Smad2. This results in the failure of vascular smooth muscle cells to differentiate and associate with endothelial cells so that blood vessels remain fragile and become dilated. Phosphorylation of Smad2 and differentiation of smooth muscle can be rescued by culture of the yolk sac with exogenous TGFbeta1. Our data show that disruption of TGFbeta signalling in vascular endothelial cells results in reduced availability of TGFbeta1 protein to promote recruitment and differentiation of smooth muscle cells, and provide a possible explanation for weak vessel walls associated with HHT.