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101.
Freek G. Bouwman Jolanda M. A. Boer Sandra Imholz Ping Wang W. M. Monique Verschuren Martijn E. T. Dollé Edwin C. M. Mariman 《Genes & nutrition》2014,9(6)
Weight gain, when it leads to overweight or obesity, is nowadays one of the major health problems. ACE, FTO, AKR1C2, TIMP4 and MMP2 genes have been implicated in previous studies on weight regulation. This study investigated the contribution of polymorphisms in these five candidate genes to the risk of weight gain over a 10-year time period. Two groups were selected from participants of the Doetinchem cohort study who were followed over a 10-year period: A stable weight group (±2 kg/10 year; n = 259) and a weight gainers group who increased their body weight by roughly 10 % (>8 kg/10 year; n = 237). Starting BMI was between 20 and 35 kg/m2 and baseline age between 20 and 45 years. Selected SNPs and insert/deletion in candidate genes were measured in each group. In men, the allelic distribution of FTO rs9939609 (χ2p = 0.005), ACE rs4340 (χ2p = 0.006) and AKR1C2 rs12249281 (χ2p = 0.019) differed between the weight stable and weight gainers group. Interaction between FTO rs9939609 and ACE rs4340 was observed. In women, the allelic distribution of MMP2 rs1132896 differed between the weight stable and weight gainers group (χ2p = 0.00001). The A-allele of FTO was associated with a 1.99× higher risk of gaining weight in men (OR 1.99, p = 0.020), while in women, the C-allele of MMP2 was associated with a 2.50× higher risk of weight gain (OR 2.50, p = 0.001) over the 10-year period. We found that FTO in men and MMP2 in women are associated with weight gain over a 10-year follow-up period.
Electronic supplementary material
The online version of this article (doi:10.1007/s12263-014-0434-2) contains supplementary material, which is available to authorized users. 相似文献102.
Bruno Ringeval Laurent Augusto Hervé Monod Dirk van Apeldoorn Lex Bouwman Xiaojuan Yang David L. Achat Louise P. Chini Kristof Van Oost Bertrand Guenet Rong Wang Bertrand Decharme Thomas Nesme Sylvain Pellerin 《Global Change Biology》2017,23(8):3418-3432
Phosphorus (P) availability in soils limits crop yields in many regions of the World, while excess of soil P triggers aquatic eutrophication in other regions. Numerous processes drive the global spatial distribution of P in agricultural soils, but their relative roles remain unclear. Here, we combined several global data sets describing these drivers with a soil P dynamics model to simulate the distribution of P in agricultural soils and to assess the contributions of the different drivers at the global scale. We analysed both the labile inorganic P (PILAB), a proxy of the pool involved in plant nutrition and the total soil P (PTOT). We found that the soil biogeochemical background corresponding to P inherited from natural soils at the conversion to agriculture (BIOG) and farming practices (FARM) were the main drivers of the spatial variability in cropland soil P content but that their contribution varied between PTOT vs. PILAB. When the spatial variability was computed between grid cells at half‐degree resolution, we found that almost all of the PTOT spatial variability could be explained by BIOG, while BIOG and FARM explained 38% and 63% of PILAB spatial variability, respectively. Our work also showed that the driver contribution was sensitive to the spatial scale characterizing the variability (grid cell vs. continent) and to the region of interest (global vs. tropics for instance). In particular, the heterogeneity of farming practices between continents was large enough to make FARM contribute to the variability in PTOT at that scale. We thus demonstrated how the different drivers were combined to explain the global distribution of agricultural soil P. Our study is also a promising approach to investigate the potential effect of P as a limiting factor for agroecosystems at the global scale. 相似文献
103.
Sialylation is a biosynthetic process occurring in the trans compartments
of the Golgi apparatus. Corresponding evidence is based on localization and
biochemical studies of alpha2, 6(N)-sialyltransferase (ST6Gal I) as
previously reported. Here we describe generation and characterization of
polyclonal antibodies to recombinant rat alpha2,3(N)-sialyltransferase
(ST3Gal III) expressed as a soluble enzyme in Sf9 cells or as a
beta-galactosidase-human-ST3Gal III fusion- protein from E.coli ,
respectively. These antibodies were used to localize ST3Gal III by
immunofluorescence in various cell lines and rat kidney tissue sections. In
transiently transfected COS cells the antibodies directed to soluble
sialyltransferase or the sialyltransferase portion of the fusion-protein
only recognized the recombinant antigen retained in the endoplasmic
reticulum. However, an antibody fraction crossreactive with
beta-galactosidase recognized natively expressed ST3Gal III which was found
to be colocalized with beta1, 4-galactosyltransferase in the Golgi
apparatus of several cultured cell lines. Antibodies affinity purified on
the beta- galactosidase-ST3Gal III fusion-protein column derived from both
antisera have then been used to localize the enzyme in perfusion-fixed rat
kidney sections. We found strong staining of the Golgi apparatus of tubular
epithelia and a brush-border-associated staining which colocalized with
cytochemical staining of the H+ATPase. This subcellular localization was
not observed for ST6Gal I which localized to the Golgi apparatus. These
data show colocalization in the Golgi apparatus and different post-Golgi
distributions of the two sialyltransferases.
相似文献
104.
Marie-Laure Bayle Suzan Wopereis Jildau Bouwman Ben van Ommen Augustin Scalbert Estelle Pujos-Guillot 《Metabolomics : Official journal of the Metabolomic Society》2012,8(6):1114-1129
Recommended dietary allowances for micronutrients fluctuate noticeably within European Union countries. The Network of Excellence EURRECA (EURopean micronutrient RECommendations Aligned) aims at harmonising micronutrient intake recommendations through population groups. The lack of proper markers of status for some micronutrients limits progress in this area: metabolomics could help identifying such new markers. We developed an original metabolomic strategy in order to monitor the largest fraction of a list of >270 metabolites known to be influenced by the micronutrients of interest. To improve the coverage of these metabolites in plasma, a multi platform approach was performed using both liquid and gas chromatography coupled to mass spectrometry. A sample preparation protocol based on a three-step plasma fractionation has been set up, using both liquid and solid phase extractions. Four fractions were obtained containing respectively polar metabolites, neutral lipids, free fatty acids and polar lipids. Recoveries were determined using spiked plasma samples, and the advantages and drawbacks of the fractionation method compared to a commonly used single preparation step method were investigated in terms of metabolites detection and robustness. Fractionation improved coverage of the endogenous metabolome more than twice in terms of extracted features, allowing to identify 90?metabolites. 相似文献
105.
Keith A. Grimaldi Ben van Ommen Jose M. Ordovas Laurence D. Parnell John C. Mathers Igor Bendik Lorraine Brennan Carlos Celis-Morales Elisa Cirillo Hannelore Daniel Brenda de Kok Ahmed El-Sohemy Susan J. Fairweather-Tait Rosalind Fallaize Michael Fenech Lynnette R. Ferguson Eileen R. Gibney Mike Gibney Ingrid M. F. Gjelstad Jim Kaput Anette S. Karlsen Silvia Kolossa Julie Lovegrove Anna L. Macready Cyril F. M. Marsaux J. Alfredo Martinez Fermin Milagro Santiago Navas-Carretero Helen M. Roche Wim H. M. Saris Iwona Traczyk Henk van Kranen Lars Verschuren Fabio Virgili Peter Weber Jildau Bouwman 《Genes & nutrition》2017,12(1):35
Nutrigenetic research examines the effects of inter-individual differences in genotype on responses to nutrients and other food components, in the context of health and of nutrient requirements. A practical application of nutrigenetics is the use of personal genetic information to guide recommendations for dietary choices that are more efficacious at the individual or genetic subgroup level relative to generic dietary advice. Nutrigenetics is unregulated, with no defined standards, beyond some commercially adopted codes of practice. Only a few official nutrition-related professional bodies have embraced the subject, and, consequently, there is a lack of educational resources or guidance for implementation of the outcomes of nutrigenetic research. To avoid misuse and to protect the public, personalised nutrigenetic advice and information should be based on clear evidence of validity grounded in a careful and defensible interpretation of outcomes from nutrigenetic research studies. Evidence requirements are clearly stated and assessed within the context of state-of-the-art ‘evidence-based nutrition’. We have developed and present here a draft framework that can be used to assess the strength of the evidence for scientific validity of nutrigenetic knowledge and whether ‘actionable’. In addition, we propose that this framework be used as the basis for developing transparent and scientifically sound advice to the public based on nutrigenetic tests. We feel that although this area is still in its infancy, minimal guidelines are required. Though these guidelines are based on semi-quantitative data, they should stimulate debate on their utility. This framework will be revised biennially, as knowledge on the subject increases. 相似文献
106.
Giada Ferrari Judith Neukamm Helle T. Baalsrud Abagail M. Breidenstein Mark Ravinet Carina Phillips Frank Rühli Abigail Bouwman Verena J. Schuenemann 《Philosophical transactions of the Royal Society of London. Series B, Biological sciences》2020,375(1812)
Smallpox, caused by the variola virus (VARV), was a highly virulent disease with high mortality rates causing a major threat for global human health until its successful eradication in 1980. Despite previously published historic and modern VARV genomes, its past dissemination and diversity remain debated. To understand the evolutionary history of VARV with respect to historic and modern VARV genetic variation in Europe, we sequenced a VARV genome from a well-described eighteenth-century case from England (specimen P328). In our phylogenetic analysis, the new genome falls between the modern strains and another historic strain from Lithuania, supporting previous claims of larger diversity in early modern Europe compared to the twentieth century. Our analyses also resolve a previous controversy regarding the common ancestor between modern and historic strains by confirming a later date around the seventeenth century. Overall, our results point to the benefit of historic genomes for better resolution of past VARV diversity and highlight the value of such historic genomes from around the world to further understand the evolutionary history of smallpox as well as related diseases.This article is part of the theme issue ‘Insights into health and disease from ancient biomolecules’. 相似文献
107.
Haanstra JR Kerkhoven EJ van Tuijl A Blits M Wurst M van Nuland R Albert MA Michels PA Bouwman J Clayton C Westerhoff HV Bakker BM 《Molecular microbiology》2011,79(1):94-108
Awareness is growing that drug target validation should involve systems analysis of cellular networks. There is less appreciation, though, that the composition of networks may change in response to drugs. If the response is homeostatic (e.g. through upregulation of the target protein), this may neutralize the inhibitory effect. In this scenario the effect on cell growth and survival would be less than anticipated based on affinity of the drug for its target. Glycolysis is the sole free-energy source for the deadly parasite Trypanosoma brucei and is therefore a possible target pathway for anti-trypanosomal drugs. Plasma-membrane glucose transport exerts high control over trypanosome glycolysis and hence the transporter is a promising drug target. Here we show that at high inhibitor concentrations, inhibition of trypanosome glucose transport causes cell death. Most interestingly, sublethal concentrations initiate a domino effect in which network adaptations enhance inhibition. This happens via (i) metabolic control exerted by the target protein, (ii) decreases in mRNAs encoding the target protein and other proteins in the same pathway, and (iii) partial differentiation of the cells leading to (low) expression of immunogenic insect-stage coat proteins. We discuss how these 'anti-homeostatic' responses together may facilitate killing of parasites at an acceptable drug dosage. 相似文献
108.
Claudine Nieuwoudt Rialet Pieters Laura P. Quinn Henrik Kylin Anders R. Borgen Henk Bouwman 《Soil & Sediment Contamination》2011,20(2):188-204
Polycyclic aromatic hydrocarbons (PAHs) are of global concern due to their ubiquitous presence, toxicity, and carcinogenicity. No data on PAHs in soils from South Africa have been published, even though it has the largest economy and industrial base in Africa. During this initial assessment, the levels of PAHs were determined in soils and sediments collected from central South Africa, specifically targeting industrial, residential, and agricultural areas. Analysis was performed by gas chromatography/mass spectrometry (GC/MS). The total concentration of PAHs (Σt-PAH) ranged between 44 and 39,000 ng/g, dw and the concentration of carcinogenic PAHs (Σc-PAH) ranged between 19 and 19,000 ng/g, dw. Pyrogenic processes were the most likely sources, with minimal petrogenic contributions. PAH levels were in the same range as levels reported from other countries, and the majority of the sites did not exceed Canadian environmental quality guidelines. Based on assumptions for dermal contact and ingestion of PAH-contaminated soil, we provisionally calculated only a small increase in cancer risk, but additional PAH inhalation could add considerably to this risk. Our data indicates a need for more analysis in industrial and residential areas, and should include air. 相似文献
109.
Hu C Wei H van den Hoek AM Wang M van der Heijden R Spijksma G Reijmers TH Bouwman J Wopereis S Havekes LM Verheij E Hankemeier T Xu G van der Greef J 《PloS one》2011,6(5):e19423
Background
Lipids are known to play crucial roles in the development of life-style related risk factors such as obesity, dyslipoproteinemia, hypertension and diabetes. The first selective cannabinoid-1 receptor blocker rimonabant, an anorectic anti-obesity drug, was frequently used in conjunction with diet and exercise for patients with a body mass index greater than 30 kg/m2 with associated risk factors such as type II diabetes and dyslipidaemia in the past. Less is known about the impact of this drug on the regulation of lipid metabolism in plasma and liver in the early stage of obesity.Methodology/Principal Findings
We designed a four-week parallel controlled intervention on apolipoprotein E3 Leiden cholesteryl ester transfer protein (ApoE*3Leiden.CETP) transgenic mice with mild overweight and hypercholesterolemia. A liquid chromatography–linear ion trap-Fourier transform ion cyclotron resonance-mass spectrometric approach was employed to investigate plasma and liver lipid responses to the rimonabant intervention. Rimonabant was found to induce a significant body weight loss (9.4%, p<0.05) and a significant plasma total cholesterol reduction (24%, p<0.05). Six plasma and three liver lipids in ApoE*3Leiden.CETP transgenic mice were detected to most significantly respond to rimonabant treatment. Distinct lipid patterns between the mice were observed for both plasma and liver samples in rimonabant treatment vs. non-treated controls. This study successfully applied, for the first time, systems biology based lipidomics approaches to evaluate treatment effects of rimonabant in the early stage of obesity.Conclusion
The effects of rimonabant on lipid metabolism and body weight reduction in the early stage obesity were shown to be moderate in ApoE*3Leiden.CETP mice on high-fat diet. 相似文献110.
Anna Finkers-Tomczak Sarah Danan Thijs van Dijk Amelework Beyene Liesbeth Bouwman Hein Overmars Herman van Eck Aska Goverse Jaap Bakker Erin Bakker 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2009,119(1):165-173
The Grp1 locus confers broad-spectrum resistance to the potato cyst nematode species Globodera pallida and Globodera rostochiensis and is located in the GP21-GP179 interval on the short arm of chromosome V of potato. A high-resolution map has been developed
using the diploid mapping population RHAM026, comprising 1,536 genotypes. The flanking markers GP21 and GP179 have been used
to screen the 1,536 genotypes for recombination events. Interval mapping of the resistances to G. pallida Pa2 and G. rostochiensis Ro5 resulted in two nearly identical LOD graphs with the highest LOD score just north of marker TG432. Detailed analysis
of the 44 recombinant genotypes showed that G. pallida and G. rostochiensis resistance could not be separated and map to the same location between marker SPUD838 and TG432. It is suggested that the
quantitative resistance to both nematode species at the Grp1 locus is mediated by one or more tightly linked R genes that might belong to the NBS-LRR class.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.
A. Finkers-Tomczak and S. Danan contributed equally to this research. 相似文献