A chlorophyll b-less mutant of Chlamydomonas reinhardii lacking in the light-harvesting chlorophyll a/b-protein complex but not in its apoproteins

The mutant pg 113, derived from Chlamydomonas reinhardii, arg₂⁻ mt⁺ (parent strain), completely lacks chlorophyll (Chl) b but is still able to grow under autotrophic conditions. The light-harvesting Chl a/b-protein complex (LHCP) is absent. This is shown (a) by the lack of the corresponding signal in the CD spectrum of thylakoids and (b) by the absence of the band of the LHCP after electrophoresis of partially solubilized thylakoid membranes on lithium dodecyl sulfate polyacrylamide gels. All the other chlorophyll-protein complexes are present. In spite of the absence of the LHCP, all the polypeptide components of this complex are present in the mutant in the same ratios as in the parent strain, although in slightly reduced amounts. The LHC apoproteins are synthesized, processed and transported into the thylakoid membrane of the mutant. Moreover, the phosphorylation of thylakoid membrane polypeptides, which is related to the regulation of the energy distribution between Photosystem I and II, is the same in the mutant and in the parent strain, indicating that phosphorylation is not dependent on the presence of Chl b. Electron micrographs of thin sections of whole cells show that there are stacked regions of thylakoids in both the mutant and the parent strain chloroplasts. However, in the mutant, stacks are located near the chloroplast envelope, while long stretches or sometimes circles of unstacked membranes are found in the interior, mostly around the pyrenoid.     

From signal transduction to signal interpretation: an alternative model for the molecular function of insulin receptor substrates

The insulin receptor (IR) recruits adaptor proteins, so-called insulin receptor substrates (IRS), to connect with downstream signalling pathways. A family of IRS proteins was defined based on three major common structural elements: Amino-terminal PH and PTB domains that mediate protein-lipid or protein-protein interactions, mostly carboxy-terminal multiple tyrosine residues that serve as binding sites for proteins that contain one or more SH2 domains and serine/threonine-rich regions which may be recognized by negative regulators of insulin action. The current model for the role of IRS proteins therefore combines an adaptor function with the integration of mostly negative input from other signal transduction cascades allowing for modulation of signalling amplitude. In this review we propose an extended version of the adaptor model that can explain how signalling specificity could be implemented at the level of IRS proteins.     

Lipid and pigment composition of a chlorophyll b-deficient mutant of Chlamydomonas reinhardii

Lipids and pigments of the chlorophyll b -deficient mutant pg-113 and the parent strain (ps) of Chlamydomonas were analysed and compared. Monogalactosyldiglyceride, digalactosyldiglyceride, diacylglyceryl(N, N, N-trimethyl)homoserine, sulfoquinovosyldiglyceride, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol were found as major lipid components. While the lipid patterns were qualitatively and quantitatively almost the same in the two strains, the C₁₆/C₁₈ fatty acid ratios were different, 0.85 in the mutant and 1.11 in the parent strain. Furthermore, the relative amounts of C₁₆- and C₁₈-monoene fatty acids were slightly enhanced and the C₁₈-trienes slightly reduced in the mutant. In the parent strain, chlorophylls a and b , α- and β-carotene, lutein, violaxanthin, neoxanthin and loroxanthin were detected by HPLC. In the mutant, similar pigments were found, except that only traces of chlorophyll b and a reduced amount of neoxanthin were present. Since no chlorophyll-protein complex CP II could be detected in the mutant by electrophoresis, the possible interrelationships between pigment deficiency and alteration of chlorophyllprotein complexes are discussed.     

Reducing protein concentration range of biological samples using solid-phase ligand libraries

The discovery of specific polypeptides of diagnostic relevance from a biological liquid is complicated by the overall vast number and the large concentration range of all polypeptides/proteins in the sample. Depletion or fractionation methodologies have been used for selectively removing abundant proteins; however, they failed to significantly enrich trace proteins. Here we expand upon a new method that allows the reduction of the protein concentration range within a complex mixture, like neat serum, through the simultaneous dilution of high abundance proteins and the concentration of low abundance ones in a single, simple step. This methodology utilizes solid-phase ligand libraries of large diversity. With a controlled sample-to-ligand ratio it is possible to modulate the relative concentration of proteins such that a large number of peptides or proteins that are normally not detectable by classical analytical methods become, easily detectable. Application of this method for reducing the dynamic range of unfractionated serum is specifically described along with treatment of other biological extracts. Analytical surface enhanced laser desorption/ionization mass spectrometry (SELDI-MS) technology and mono- and two-dimensional electrophoresis (1-DE and 2-DE) demonstrate the increase in the number of proteins detected. Examples linking this approach with additional fractionation methods demonstrate a further increase in the number of detectable species using either the so-called "top down" or "bottom up" approaches for proteomics analysis. By enabling the detection of a greater proportion of polypeptides/proteins within a sample, this method may contribute significantly towards the discovery of new biomarkers of diagnostic relevance.     

Hexapeptide combinatorial ligand libraries: the march for the detection of the low-abundance proteome continues

After 10 years of extensive proteomic research, it has become increasingly apparent that new technologies are sorely needed for detecting the low-abundance proteome-those proteins (up to 50% in any proteome) whose concentration in tissues or cells falls below the detection limits of currently available methodologies. Here we survey one such method: a combinatorial ligand library (called ProteoMiner), comprising dozens of millions of hexapeptides capable of interacting with most, if not all, proteins in any given proteome. They act by drastically reducing the signal of high-abundance species while increasing the level of the low-abundance components to bring their signal within the detection limit of present-day tools. Such a library has been tested against a number of human biological fluids, such as sera, urine, cerebrospinal fluid as well as against cell lysates (e.g., platelets, red blood cells) with interesting results.     

Cryptic diversification in ancient asexuals: evidence from the bdelloid rotifer Philodina flaviceps

Bdelloid rotifers, darwinulid ostracods and some oribatid mites have been called 'ancient asexuals' as they speciated and survived over long-term evolutionary timescale without sexual recombination. Data on their genetic diversification are contrasting: within-species diversification is present mostly at a continental scale in a parthenogenetic oribatid mite, whereas almost no genetic diversification at all seems to occur within darwinulid ostracod species. Strangely enough, no clear data for bdelloid rotifers are available so far. In this paper, we analyse partial COI mtDNA sequences to show that a bdelloid rotifer, Philodina flaviceps, so far considered a single traditional morphological species, has actually been able to diversify into at least nine distinct evolutionary entities, with genetic distances between lineages comparable with those between different traditional species within the same genus. We discovered that local coexistence of such different independent lineages is very common: up to four lineages were found in a same stream, and up to three in a single moss sample of 5 cm(2). In contrast to the large-scale geographic pattern that has recently been reported in the oribatid mite, the spatial distribution of the bdelloid lineages provided evidence of micro-phylogeographic patterns. If the mtDNA diversity indicates that the lineages are independent and represent sympatric cryptic species within P. flaviceps, then the actual bdelloid diversity can be expected to be much greater than that recognized today.     

p-Benzylthiocarbamoyl-aspartyl-daunorubicin-substituted polytrisacryl. A new drug acid-labile arm-carrier conjugate

A new type of drug acid-labile arm-carrier is described. A hydrophilic polymer [polytrisacryl, or poly(acryloyl 2-amido-2-hydroxymethyl-1,3-propanediol)], used as a model, is substituted with p-nitrobenzyl groups. The nitrobenzyl groups are reduced to aminobenzyl and transformed into benzylisothiocyanate groups which are allowed to react with aminoacyl daunorubicin. The excess of benzylisothiocyanate is transformed into benzylthiocarbamoyl N-methyl glucamine. A conjugate containing benzylthiocarbamoyl-aspartyl daunorubicin is stable at neutral pH, and releases free daunorubicin when it is exposed to pH 5 or below. This conjugate is about 200-fold less toxic than free daunorubicin, on a molecular basis, when it is added to the medium of Lewis lung carcinoma (3LL) cells in culture.     

Combinatorial peptide libraries to overcome the classical affinity-enrichment methods in proteomics

The enrichment of targeted low-abundance proteins is possible by affinity adsorption using selected sorbents. Different categories of very dilute proteins are present in most of biological extracts so that specific affinity methods are unable to address their collective enrichment. Only recently an interesting approach has been proposed associating the affinity of multiple ligands used as a library mode under overloading much beyond the saturation of the affinity mixed bed. The principle and the limits of this technology are reported along with their current and potential applications in various domains.     

Energy Supply for ATP-Synthase Deficient Chloroplasts of Chlamydomonas reinhardii

The mutant F54 of the unicellular green alga Chlamydomonas reinhardiiis not able to perform photophos-phorylation. Nevertheless,it grows on acetate and the chloroplasts accomplish most oftheir energy-requiring synthetic processes. However, no light-dependentchloroplast protein synthesis could be detected in intact F54chloroplasts isolated from a cell wall-deficient double mutantF54-cw-15. Exogenous ATP was not able to induce this in organelloprotein synthesis to an appreciable degree. In contrast, thestrictly ATP-dependent protein synthesis was stimulated veryefficiently by glyceraldehyde-3-phosphate, dihydroxy-acetonephosphate and glycerol-3-phosphate, but strongly inhibited by3-phosphoglycerate. These compounds can be transported acrossthe envelope membrane by the triose phosphate translocator.Pyridoxal phosphate, a specific inhibitor of the translocator,abolished the stimulation by triose phosphates. Spermidine,which activates initiation of translation in chloroplasts, enhancedtriose phosphate-stimulated protein synthesis even further.In the dark, no stimulation was observed, indicating that alight-dependent reaction was also involved in this kind of ATPproduction in chloroplasts. The results suggest that chloroplastsdefective in photophosphorylation recruit their energy via anATP shuttle which was shown in this study to import rather thanexport ATP across the chloroplast envelope. (Received August 21, 1997; Accepted November 18, 1997)