DNA modification of live cell surface

We report a novel approach for the attachment of DNA fragments to the surface of live cells. By using fluorescence microscopy and flow cytometry we demonstrated that our synthetic conjugates of fatty acid with oligonucleotides can be incorporated in plasma membrane and then hybridized with complementary sequences at the cell surface. Method permits to control amount of immobilized DNA on the cell surface. All procedures can be completed within minutes and do not alter cell viability. Using this approach we tethered floating myeloid HL-60 cells to adherent A431 epitheliocytes in a sequence specific fashion. Thus, this method allows rapid and simple DNA multicoding of the cell surface and, therefore, opens new opportunities in manipulating with cell–cell interactions.     

Cortical potential imaging using L-curve and GCV method to choose the regularisation parameter

Background

The electroencephalography (EEG) is an attractive and a simple technique to measure the brain activity. It is attractive due its excellent temporal resolution and simple due to its non-invasiveness and sensor design. However, the spatial resolution of EEG is reduced due to the low conducting skull. In this paper, we compute the potential distribution over the closed surface covering the brain (cortex) from the EEG scalp potential. We compare two methods – L-curve and generalised cross validation (GCV) used to obtain the regularisation parameter and also investigate the feasibility in applying such techniques to N170 component of the visually evoked potential (VEP) data.

Methods

Using the image data set of the visible human man (VHM), a finite difference method (FDM) model of the head was constructed. The EEG dataset (256-channel) used was the N170 component of the VEP. A forward transfer matrix relating the cortical potential to the scalp potential was obtained. Using Tikhonov regularisation, the potential distribution over the cortex was obtained.

Results

The cortical potential distribution for three subjects was solved using both L-curve and GCV method. A total of 18 cortical potential distributions were obtained (3 subjects with three stimuli each – fearful face, neutral face, control objects).

Conclusions

The GCV method is a more robust method compared to L-curve to find the optimal regularisation parameter. Cortical potential imaging is a reliable method to obtain the potential distribution over cortex for VEP data.

     

Hydroacoustic investigation of taxonomic composition and of vertical distribution of fish in the riverbed depression

An original method of taxonomic identification of fish (at the family level) by means of hydroacoustic equipment is elaborated. The method is based on analysis of the form of instantaneous envelope of amplitudes of the acoustic signal reflected from fish. Analysis of distribution of mass fish of different size over horizons of the water column is made on the deep-water riverbed depression of the Irtysh and characteristics of their diurnal vertical migration are revealed.     

Specific features of microheterogeneous plasma produced by irradiation of a polymer aerogel target with an intense 500-ps-long laser pulse

The properties of microheterogeneous plasma produced by irradiation of a polymer aerogel target with an intense (10¹⁴ W/cm³) short (0.5 ps) 1.064-μm laser pulse were studied. It is found that, even at plasma densities exceeding the critical density, a small fraction of the incident laser radiation penetrates through the plasma in which the processes of density and temperature equalization still take place. The intensification (as compared to plasmas produced from denser foams and solid films) of transport processes in such plasma along and across the laser beam can be caused by the initial microheterogeneity of the solid target. The replacement of a small (10% by mass) part of the polymer with copper nanoparticles leads to a nearly twofold increase in the intensity of the plasma X-ray emission.     

Hydroacoustic study of <Emphasis Type="Italic">Salmo Salar</Emphasis> migration in the Shuya River (Onega Lake Basin)

“Netcor” computer-aided hydroacoustic system has been used to study the pattern of spawning migration in the Shuya River of the Atlantic salmon Salmo Salar inhabiting Onega Lake. The migrants’ length frequency and abundance have been evaluated, and the pattern of their spawning run, as referring to observation days and the time of day, has been determined. The data obtained with the use of the hydroacoustic system have been compared with those from a fish-counting trap at a fish-counting barrier (FCB). Hydroacoustic systems have been shown to perform better in studies of anadromous fish migration and in the determination of migrants’ abundance and the cycling and direction of their movements.     

Doped diamond-like carbon coatings for surgical instruments reduce protein and prion-amyloid biofouling and improve subsequent cleaning

Doped diamond-like carbon (DLC) coatings offer potential antifouling surfaces against microbial and protein attachment. In particular, stainless steel surgical instruments are subject to tissue protein and resilient prion protein attachment, making decontamination methods used in sterile service departments ineffective, potentially increasing the risk of iatrogenic Creutzfeldt-Jakob disease during surgical procedures. This study examined the adsorption of proteins and prion-associated amyloid to doped DLC surfaces and the efficacy of commercial cleaning chemistries applied to these spiked surfaces, compared to titanium nitride coating and stainless steel. Surfaces inoculated with ME7-infected brain homogenate were visualised using SYPRO Ruby/Thioflavin T staining and modified epi-fluorescence microscopy before and after cleaning. Reduced protein and prion amyloid contamination was observed on the modified surfaces and subsequent decontamination efficacy improved. This highlights the potential for a new generation of coatings for surgical instruments to reduce the risk of iatrogenic CJD infection.     

Angle-resolved Photoemission Spectroscopy At Ultra-low Temperatures

The physical properties of a material are defined by its electronic structure. Electrons in solids are characterized by energy (ω) and momentum (k) and the probability to find them in a particular state with given ω and k is described by the spectral function A(k, ω). This function can be directly measured in an experiment based on the well-known photoelectric effect, for the explanation of which Albert Einstein received the Nobel Prize back in 1921. In the photoelectric effect the light shone on a surface ejects electrons from the material. According to Einstein, energy conservation allows one to determine the energy of an electron inside the sample, provided the energy of the light photon and kinetic energy of the outgoing photoelectron are known. Momentum conservation makes it also possible to estimate k relating it to the momentum of the photoelectron by measuring the angle at which the photoelectron left the surface. The modern version of this technique is called Angle-Resolved Photoemission Spectroscopy (ARPES) and exploits both conservation laws in order to determine the electronic structure, i.e. energy and momentum of electrons inside the solid. In order to resolve the details crucial for understanding the topical problems of condensed matter physics, three quantities need to be minimized: uncertainty* in photon energy, uncertainty in kinetic energy of photoelectrons and temperature of the sample.In our approach we combine three recent achievements in the field of synchrotron radiation, surface science and cryogenics. We use synchrotron radiation with tunable photon energy contributing an uncertainty of the order of 1 meV, an electron energy analyzer which detects the kinetic energies with a precision of the order of 1 meV and a He³ cryostat which allows us to keep the temperature of the sample below 1 K. We discuss the exemplary results obtained on single crystals of Sr₂RuO₄ and some other materials. The electronic structure of this material can be determined with an unprecedented clarity.     

Investigations of spawning migration and assessment of abundance of the Kamchatka steelhead (<Emphasis Type="Italic">Parasalmo mykiss</Emphasis>) from the Utkholok River by means of Didson dual-frequency identification sonar

Quantative estimates of abundance of anadromous Kamchatka steelhead Parasalmo mykiss in the period of its maximum spawning migration in the shallow Utkholok River by the instrumental method using Didson dual-frequency identification sonar are presented. Equipment and methods are described for the stationary observation of spawning run of Kamchatka steelhead through the river cross section and mobile surveys of the water area of the Utkholok R. As a result of stationary observations, the abundance and size composition of Kamchatka steelhead migrating to the upper reaches of the river are determined. Peculiarities of the diurnal dynamics of migration of Kamchatka steelhead characterized by two sharp peaks of run intensity in the morning and evening were revealed. During the period of observations from September 22 to October 20, 2007, in the seasonal dynamics of migration two peaks of intensity of run of Kamchatka steelhead depending on an abrupt decrease in water temperature by 2°C were also registered. Mobile surveys supplied data on the abundance and size composition of Kamchatka steelhead in the surveyed water area of the river, on its spatial distribution, and dynamics of accumulation of fish in the river. The abundance of Kamchatka steelhead in the river almost doubled every three-four days and the spatial distribution was aggregated, producing maximum concentration mainly in areas of increasing depth and channel meandering before and after riffles. Comparison of the results of assessment of abundance of Kamchatka steelhead that arrived for spawning in 2006 and 2007 showed significant fluctuations in population abundance.     

Possible serodiagnosis of pertussis infection by an immunoenzyme method

The sera of children and adults with a history of pertussis, as well as the sera of children immunized in three injections, have been studied in the enzyme immunoassay. The levels of antibodies to Bordetella pertussis protein and lipopolysaccharide, and to disintegrated B. pertussis cells have been determined; a serum titer of 1:1,600 and higher is considered as a criterion for the serological diagnosis of pertussis.