The role of structural reorganization in charge carrier transfer in DNA molecule

A model of hole transfer in DNA molecules has been proposed, which takes into account changes in the reorganization energy and orbital coupling between the neighboring bases during the charge transfer in different molecular sequences. It is shown that the rate of hole transfer by the superexchange and hopping transfer mechanisms is limited by the relaxation of the geometries of nucleobases participating in charge migration and the dynamics of solvent molecules. The rate of charge transfer in the DNA molecule is found to be dependent on the height of the potential barriers between the nucleotide and the molecular sequences. The inclusion of the interchain charge transfer, which is characterized by weak coupling between the nucleotides located in opposite strands, does not affect the general charge transport in DNA. The increase in the number of the parallel components of the hopping mechanism leads to a rise in the charge transfer rate in the double helix.     

Use of inert gas jets to measure the forces required for mechanical gene transfection

Background

Abnormal blood glucose (BG) concentrations have been associated with increased morbidity and mortality in both critically ill adults and infants. Furthermore, hypoglycaemia and glycaemic variability have both been independently linked to mortality in these patients. Continuous Glucose Monitoring (CGM) devices have the potential to improve detection and diagnosis of these glycaemic abnormalities. However, sensor noise is a trade-off of the high measurement rate and must be managed effectively if CGMs are going to be used to monitor, diagnose and potentially help treat glycaemic abnormalities.

Aim

To develop a tool that will aid clinicians in identifying unusual CGM behaviour and highlight CGM data that potentially need to be interpreted with care.

Methods

CGM data and BG measurements from 50 infants at risk of hypoglycaemia were used. Unusual CGM measurements were classified using a stochastic model based on the kernel density method and historical CGM measurements from the cohort. CGM traces were colour coded with very unusual measurements coloured red, highlighting areas to be interpreted with care. A 5-fold validation of the model was Monte Carlo simulated 25 times to ensure an adequate model fit.

Results

The stochastic model was generated using ~67,000 CGM measurements, spread across the glycaemic range ~2-10?mmol/L. A 5-fold validation showed a good model fit: the model 80% confidence interval (CI) captured 83% of clinical CGM data, the model 90% CI captured 91% of clinical CGM data, and the model 99% CI captured 99% of clinical CGM data. Three patient examples show the stochastic classification method in use with 1) A stable, low variability patient which shows no unusual CGM measurements, 2) A patient with a very sudden, short hypoglycaemic event (classified as unusual), and, 3) A patient with very high, potentially un-physiological, glycaemic variability after day 3 of monitoring (classified as very unusual).

Conclusions

This study has produced a stochastic model and classification method capable of highlighting unusual CGM behaviour. This method has the potential to classify important glycaemic events (e.g. hypoglycaemia) as true clinical events or sensor noise, and to help identify possible sensor degradation. Colour coded CGM traces convey the information quickly and efficiently, while remaining computationally light enough to be used retrospectively or in real-time.     

Comparative analysis of the karyotype of the sculpin Myoxocephalus ochotensis (Pisces: Cottidae) from the Odyan Bay of the Sea of Okhotsk

The karyotype of the endemic Okhotsk Sea sculpin Myoxocephalus ochotensis Schmidt (Cottidae) from Odyan Bay was studied. The number and morphology of chromosomes were determined, 2n = 42 (2 metacentric, 20 subtelocentric, and 20 acrocentric chromosomes), NF = 44. Variability of chromosome number was not revealed; no difference between male and female karyotypes was found. The karyotype of the Okhotsk sculpin M. ochotensis was compared with karyotypes of the Far East Steller’s M. stelleri (Tilesius), snow M. brandti (Steindachner), and plain M. jaok (Cuvier) sculpins, and to the European shorthorn sculpin M. scorpius (Linnaeus) from White Sea. Their similarities and distinctions were shown.     

Distribution of fishes in the floodplain-channel complex of the lower reaches of the Irtysh River

The composition of fish, their location and movements in the channel, channel depressions, and flood waters of the lower reaches of the Irtysh River are investigated. This study is conducted with computer sonar systems used for different purposes. Diurnal and seasonal dynamics of movements of the fish and the abundance and composition of fish aggregations are revealed in the studied sites. The biological unity of the fish community of the floodplain-channel complex is demonstrated.     

Tentacular apparatus ultrastructure in the larva of Bolinopsis infundibulum (Lobata: Ctenophora)

Borisenko, I. and Ereskovsky, A.V. 2011. Tentacular apparatus ultrastructure in the larva of Bolinopsis infundibulum (Lobata: Ctenophora). —Acta Zoologica (Stockholm) 00 : 1–10. Most ctenophores have a tentacular apparatus, which plays some role in their feeding. Tentacle structure has been described in adults of only three ctenophore species, but the larval tentacles have remained completely unstudied. We made a light and electron microscopic study of the tentacular apparatus in the larvae of Bolinopsis infundibulum from the White Sea. The tentacular apparatus of B. infundibulum larvae consists of the tentacle proper and the tentacle root. The former contains terminally differentiated cells, while the latter contains stem cells and cells undergoing differentiation. The core of the tentacle is formed by myocytes, and its epidermis contains colloblasts (hunting cells), wall cells, degenerating cask cells, refractive vesicles, and ciliated sensory cells. Stem cells, colloblasts, and cask cells at various stages of differentiation and putative myocytes progenitors were revealed in the tentacle root. Two different populations of the stem cells in the tentacle root give rise to epidermal (colloblasts and cask cells) and mesogleal (myocytes) cell lines. Nervous elements, glandular cells, and basal lamina were not found. Step‐by‐step differentiation of colloblasts and cask cells is described.     

Microcalorimetric study of the domain organization of serum albumin

Scanning microcalorimetry was used for studying the melting of the structure of human and bovine serum albumins and their fragments. It was shown that the melting of the native structure of serum albumin observed by the excessive heat absorption is a complex process which is described by three simple transitions overlapping in temperature. This means that the serum albumin molecule consists of three more or less independent cooperative structures, domains.     

Global biodiversity research tied up by juridical interpretations of access and benefit sharing

The toolbox of instruments regulating access, transfer and use of biological material is currently re-equipped: the Nagoya Protocol was initiated to provide a legal framework to the third objective of the Convention on Biological Diversity – the fair and equitable sharing of benefits arising from the utilisation of genetic resources and associated traditional knowledge (an aspect not discussed here). In the ongoing implementation of the protocol, potentially harmful and far-reaching effects on biological research become evident. Here, we illustrate how vague definitions, lack of legal clarity and coordination, and often restrictive and complex regulations affect the transfer of biological material and associated data. Instead of promoting basic research in conservation and biodiversity, the current situation potentially jeopardises international collaboration, biodiversity research and its applications in monitoring, biocontrol and food safety. We address these challenges and discuss possible options for its practical implementation in the future.     

Effect of a single ethanol administration on the permeability of the hemato-encephalic barrier for 14C-tyrosine, 14C-DOPA and horseradish peroxidase

Single injection of ethanol at a dose of 2 and 4 g/kg has been shown to increase blood-brain barrier penetration for peripherally administered 14C-tyrosine and 14C-DOPA. No changes in blood-brain barrier penetration for horseradish peroxidase has been found. Acute effect of ethanol on blood-brain barrier systems of specific and nonspecific transport is discussed.     

The immunochemical characteristics of allergens

Modern approaches to the standardization of allergens require the use of not only biological methods, but also a wide range of physicochemical and immunological ones. To obtain Soviet standard samples, the optimum spectrum of methods for their characterization, evaluation and comparison with international standard samples should be definitely selected. After the preliminary study of a number of allergens by different immunochemical methods a set of such methods, including different kinds of electrophoresis, isoelectrofocusing, immunoblotting, etc., are proposed, these methods being considered obligatory for obtaining Soviet standard samples of allergens.     

The karyotype of the flathead sculpin Megalocottus platycephalus platycephalus (Pallas, 1814) (Pisces: Cottidae) from Odyan Bay,Sea of Okhotsk

This study deals with the karyotype of the flathead sculpin Megalocottus platycephalus platycephalus (Pallas, 1814) (family Cottidae) from Odyan Bay of the Sea of Okhotsk. The karyotype is stable: 2n = 42 (2 metacentric, 2 submeta-subtelocentric, 30 subtelocentric, and 8 acrocentric chromosomes), NF = 44 + 2. The nucleolar organizers (NOs) were identified using Ag-banding in the telomere parts of the short arms of two large subtelocentric chromosomes. Variations in the number of nucleolar organizer chromosomes and in the number of NO-staining blocks were found. Comparison of the karyotype of M. p. platycephalus with the karyotypes of previously studied species of the genus Myoxocephalus from the Sea of Japan and the Sea of Okhotsk revealed their significant similarity in the main features and difference in the number and localization of NORs.