Getting to the inside of cells using metabolic control analysis

Metabolic control analysis can relate control properties of an intact system to kinetic properties (elasticity coefficients) of the enzymes within that system. The method formulating the former as matrix inverse of the latter is elaborated here for the general case and founded in standard metabolic control theory. Then a method is developed that accomplishes the reverse: it is shown that a matrix containing all elasticity coefficients and information concerning the pathway structure equals the inverse of a matrix containing flux and concentration control coefficients. As a consequence, by measuring the control properties of an intact system, one is able to deduce its in situ pathway structure and enzyme kinetic properties: This solves the ever-present question of whether the kinetic properties of enzymes in their isolated state differ from those under the conditions prevailing in the cell.     

The Product of glnL Is Not Essential for Regulation of Bacterial Nitrogen Assimilation

The glnL product is not necessary for the control of expression of glnA and other nitrogen-regulated genes, but it presumably communicates reduntant information on the availability of ammonia from an ammonia-sensitive system consisting of the products of glnB and glnD to the regulatory products of glnF and glnG.     

Influence of 4′-6-diamidino-2-phenylindole on the secondary structure and template activities of DNA and polydeoxynucleotides

Summary The interaction between 4-6-Diamidino-2-Phenylindole-hydrochloride (DAPI) and a variety of DNAs and synthetic polydeoxynucleotides was investigated in order to delineate the nucleic acid structural features necessary for binding. The spectra of DAPI-DNA complexes, measured at various DAPI-DNA molar ratios (r), are hypochromic relative to DNA in the region of its maximum absorption. All the curves pass through an isosbestic point at 268 nm. A new maxima appears in the region of 380–392 nm for DAPI-DNA complexes. The magnitude of the peaks in the region are directly proportional to the amount of drug present in the complex.Studies with various DNA types and synthetic polydeoxynucleotides indicate that the drug preferentially binds to dAT-rich regions of DNA. This was also confirmed by enzymatic studies. The inhibition of template action by DAPI in a purified DNA-polymerase reaction was dependent on the dAT-content of the template. The implication of these data to explain a selective binding of DAPI to mitochondrial DNA have been discussed.     

Electrically induced Ca2+ transport across the membrane of Paramecium caudatum measured by means of flow-through technique

Transmembrane calcium fluxes related to excitation were studied in Paramecium caudatum. Radioactive (⁴⁵Ca²⁺) or inactive solution was flowed through a dense suspension of unlabelled or labelled cells, and radioactivity was monitored in the solution. The organisms were electrically stimulated by means of extracellular electrodes. As a result of stimulation Ca²⁺ uptake and release was measured. The uptake response dropped with increasing number of successive stimulation periods and increased with growing stimulus amplitude and duration. Maximum uptake was obtained at 20 V/cm and at least 60 s duration and for temperatures between 10 and 15°C. A Ca²⁺ influx of 700 pmol/1000 cells upon 1 min stimulation was measured at 15°C. This corresponds to an increment of the intraciliary [Ca²⁺] of about $\text{5 · 10}{}^{-4}\text{M}$. Ca²⁺ release was dependent on the stimulus amplitude in a similar manner as was Ca²⁺ uptake. Photographic recordings of the swimming behaviour of the organisms were used to interpret the flux data. At temperatures up to 15°C the cells swam backward perpendicular to the applied electric field of 10 to 20 V/cm. At 25°C they showed forward spiralling movement. For the first time evidence was brought for stimulated Ca²⁺ influx in Paramecium at physiological temperatures. It is concluded from the results that a strong active Ca²⁺ extrusion from the intraciliary space counteracts the influx. The Ca²⁺ pump rate must be at least $\text{8 · 10}{}^{12}$ calcium ions per s per cm² ciliary surface.     

A Second Class of Acetylcholinesterase-Deficient Mutants of the Nematode CAENORHABDITIS ELEGANS

In Johnson et al. (1981), the Caenorhabditis elegans mutant strain PR1000, homozygous for the ace-1 mutation p1000, is shown to be deficient in the class A subset of acetylcholinesterases, which comprises approximately one-half of the total C. elegans acetylcholinesterase activity. Beginning with this strain, we have isolated 487 new behavioral and morphological mutant strains. Two of these, independently derived, lack approximately 98% of the wild-type acetylcholinesterase activity and share the same specific uncoordinated phenotype; both move forward in a slow and uncoordinated manner, and when mechanically stimulated to induce reversal, both hypercontract and become temporarily paralyzed. In addition to the ace-1 mutation, both strains also harbor recessive mutations in the same newly identified gene, ace-2, which maps to chromosome I and is therefore not linked to ace-1. Gene dosage experiments suggest that ace-2 is a structural gene for the remaining class B acetylcholinesterases, which are not affected by ace-1.—The uncoordinated phenotype of the newly isolated, doubly mutant strains depends on both the ace-1 and ace-2 mutations; homozygosity for either mutation alone produces normally coordinated animals. This result implies functional overlap of the acetylcholinesterases controlled by ace-1 and ace-2, perhaps at common synapses. Consistent with this, light microscopic histochemical staining of permeabilized whole mounts indicates some areas of possible spatial overlap of these acetylcholinesterases (nerve ring, longitudinal nerve cords). In addition, there is at least one area where only ace-2-controlled acetylcholinesterase activity appears (pharyngeo-intestinal valve).     

Glycopeptidolipids — a new class of artificial antigens with carbohydrate determinants. Synthesis of artificial antigen with type-specific oligosaccharide hapten fromNeisseria meningitidis group B

Synthetic lipopeptideN-palmitoyltyrosyl-seryl-seryl-asparaginyl-alanine, an analogue of B-mitogenic tripalmitoyl-pentapeptide fromEscherichia coli lipoprotein, was coupled with an oligosaccharide hapten fromNeisseria meningitidis lipooligosaccharide to give a glycopeptidolipid conjugate — the artificial antigen of a new type possessing the type-specific microbial determinant.Abbreviations iBu isobutyl - Bu^t t-butyl - Boc t-butoxycarbonyl - DCC N,N-dicyclohexylcarbodiimide - DMF N,N-dimethylformamide - DMSO dimethylsulfoxide - ONB N-hydroxy-5-norbornen-2,3-dicarboximide ester - ONp 4-nitrophenyl ester - Pal palmitoyl - TEMED N,N,N,N-tetramethylethylenediamine - Z benzyloxycarbonyl - KDO 2-keto-3-deoxyoctonic acid - Hep L-glycero-d-manno-heptose - TPP S-[2,3-bis(palmitoyloxy)-(2RS)propyl]-N-palmitoylcysteinyl-seryl-asparaginyl-alanine.     

Multimeric α-Lactalbumin from Human Milk Induces Apoptosis through a Direct Effect on Cell Nuclei

A fraction from human milk containing spf-multimer α-lactalbumin (MAL) induces apoptosis in tumor cells and immature cells but spares mature cells. The mechanism of apoptosis induction and the molecular basis for the difference in susceptibility between tumor cells and healthy cells have not been defined. In this study we examined the interaction of MAL with different cellular compartments, using confocal microscopy and subcellular fractionation. MAL was shown to accumulate in the nuclei of sensitive cells rather than in the cytosol, the vesicular fraction, or the ER–Golgi complex. Nuclear uptake occurred rapidly in cells that were susceptible to the apoptosis-inducing effect, but not in nuclei of resistant cells. Nuclear uptake was through the nuclear pore complex and was critical for the induction of DNA fragmentation, since inhibition of nuclear uptake with WGA rescued digitonin-permeabilized cells from induction of DNA fragmentation. Ca²⁺was required for MAL-induced DNA fragmentation but nuclear uptake of MAL was independent of Ca²⁺. This way MAL differs from most previously described agents in that it crosses the plasma membrane and cytosol, and enters cell nuclei where it induces DNA fragmentation through a direct effect at the nuclear level.     

SNX27–Retromer directly binds ESCPE-1 to transfer cargo proteins during endosomal recycling

Coat complexes coordinate cargo recognition through cargo adaptors with biogenesis of transport carriers during integral membrane protein trafficking. Here, we combine biochemical, structural, and cellular analyses to establish the mechanistic basis through which SNX27–Retromer, a major endosomal cargo adaptor, couples to the membrane remodeling endosomal SNX-BAR sorting complex for promoting exit 1 (ESCPE-1). In showing that the SNX27 FERM (4.1/ezrin/radixin/moesin) domain directly binds acidic-Asp-Leu-Phe (aDLF) motifs in the SNX1/SNX2 subunits of ESCPE-1, we propose a handover model where SNX27–Retromer captured cargo proteins are transferred into ESCPE-1 transport carriers to promote endosome-to-plasma membrane recycling. By revealing that assembly of the SNX27:Retromer:ESCPE-1 coat evolved in a stepwise manner during early metazoan evolution, likely reflecting the increasing complexity of endosome-to-plasma membrane recycling from the ancestral opisthokont to modern animals, we provide further evidence of the functional diversification of yeast pentameric Retromer in the recycling of hundreds of integral membrane proteins in metazoans.

Coat complexes coordinate cargo recognition with biogenesis of transport carriers during integral membrane protein trafficking. Mechanistic study of the function and evolution of the SNX27:Retromer:ESCPE-1 assembly provides new insight into pathway defects associated with neurodegenerative disease and an interesting comparison with the yeast pentameric Retromer.     

Diversification of ectoparasite assemblages and climate: an example with fleas parasitic on small mammals

Aim We studied the relationships between the numbers of species and numbers of higher taxa (genera, tribes, subfamilies and families) in flea assemblages of small mammalian hosts with the aims of: (a) comparing these relationships across different regions, and (b) testing the hypothesis that flea assemblages in warmer regions diversify mainly via intrahost speciation, whereas those in colder regions diversify mainly via host switching. Location The study used previously published data on flea assemblages on small mammalian hosts from 25 different regions of the Holarctic. Methods The number of flea genera, tribes, subfamilies or families in an assemblage (host species) was plotted against the number of flea species in this assemblage for each region separately, and a power function was fitted to the resulting relationships. Then, the values of the exponent of the power function for a region were regressed against the mean annual temperature in this region, across all regions. Results The relationships between the number of flea species and the numbers of flea genera, tribes, subfamilies or families on a host species in each region were found to be well described by simple power functions. The exponent of the power function of the relationship between the number of flea species and the number of flea genera per host tended to decrease with increasing local mean annual temperature. When two apparent outliers from the trend (corresponding to regions where sampling was not performed as in other regions) were omitted from the analysis, the negative relationship between temperature and the exponent of the power function between the number of flea species and number of flea genera per host became highly significant. No relationship was found between the values of the exponents of the power functions between the number of flea species and the number of flea tribes, subfamilies or families per host, and the mean local annual temperature. Main conclusions The results suggest that the diversification of flea assemblages is associated with climatic variables. In warm regions, the greater number of congeneric species per flea assemblage, reflected by the lower exponent of the power function, may well be the outcome of intrahost speciation. This indicates that, as regional temperature increases, intrahost speciation becomes a relatively more important mode of diversification than acquisition of fleas via host switching.