Identification of unique type II polyketide synthase genes in soil

Many bacteria, particularly actinomycetes, are known to produce secondary metabolites synthesized by polyketide synthases (PKS). Bacterial polyketides are a particularly rich source of bioactive molecules, many of which are of potential pharmaceutical relevance. To directly access PKS gene diversity from soil, we developed degenerate PCR primers for actinomycete type II KS(alpha) (ketosynthase) genes. Twenty-one soil samples were collected from diverse sources in New Jersey, and their bacterial communities were compared by terminal restriction fragment length polymorphism (TRFLP) analysis of PCR products generated using bacterial 16S rRNA gene primers (27F and 1525R) as well as an actinomycete-specific forward primer. The distribution of actinomycetes was highly variable but correlated with the overall bacterial species composition as determined by TRFLP. Two samples were identified to contain a particularly rich and unique actinomycete community based on their TRFLP patterns. The same samples also contained the greatest diversity of KS(alpha) genes as determined by TRFLP analysis of KS(alpha) PCR products. KS(alpha) PCR products from these and three additional samples with interesting TRFLP pattern were cloned, and seven novel clades of KS(alpha) genes were identified. Greatest sequence diversity was observed in a sample containing a moderate number of peaks in its KS(alpha) TRFLP. The nucleotide sequences were between 74 and 81% identical to known sequences in GenBank. One cluster of sequences was most similar to the KS(alpha) involved in ardacin (glycopeptide antibiotic) production by Kibdelosporangium aridum. The remaining sequences showed greatest similarity to the KS(alpha) genes in pathways producing the angucycline-derived antibiotics simocyclinone, pradimicin, and jasomycin.     

Silicon does not always mitigate zinc toxicity in maize

We have investigated the influence of silicon on higher zinc concentration reducing the growth of aboveground parts by ca 50 % in young maize plants (hybrid Novania) grown in hydroponics. Eight different treatments were used: control, Zn (800 μM ZnSO₄·7H₂O), Si1/Si2.5/Si5 (1/2.5/5 mM Na₂SiO₇) and Zn+Si (combination of zinc and all silicon concentrations). The concentration of Zn and Si and their distribution in plants was determined. The growth parameters (length of primary seminal root, leaf area of first and second leaves, fresh and dry weight of below- and above-ground plant parts) of plants grown in various Zn+Si treatments were significantly decreased in comparison to all other treatments. Increasing concentration of Si in combination with Zn treatment and selected hybrid (Novania) resulted in increased physiological stress in comparison to Zn treatment. However, roots and shoots of all Zn+Si treated plants contained significantly lower amount of Zn than Zn treatment. The Si concentration in roots was the same in Si and Zn+Si plants. In general, higher amount of Si was observed in shoots than in roots of Si1- and Si2.5-treated plants and opposite was observed in Si5-treated plants. In spite of significantly decreased root and shoot accumulation of Zn in the presence of Si, no positive effect of Si on Zn toxicity in young maize plants under experimental conditions used in this work and used maize hybrid was observed.     

Enhancement of vitamin B6 levels in rice expressing Arabidopsis vitamin B6 biosynthesis de novo genes

Vitamin B₆ (pyridoxine) is vital for key metabolic reactions and reported to have antioxidant properties in planta. Therefore, enhancement of vitamin B₆ content has been hypothesized to be a route to improve resistance to biotic and abiotic stresses. Most of the current studies on vitamin B₆ in plants are on eudicot species, with monocots remaining largely unexplored. In this study, we investigated vitamin B₆ biosynthesis in rice, with a view to examining the feasibility and impact of enhancing vitamin B₆ levels. Constitutive expression in rice of two Arabidopsis thaliana genes from the vitamin B₆ biosynthesis de novo pathway, AtPDX1.1 and AtPDX2, resulted in a considerable increase in vitamin B₆ in leaves (up to 28.3‐fold) and roots (up to 12‐fold), with minimal impact on general growth. Rice lines accumulating high levels of vitamin B₆ did not display enhanced tolerance to abiotic stress (salt) or biotic stress (resistance to Xanthomonas oryzae infection). While a significant increase in vitamin B₆ content could also be achieved in rice seeds (up to 3.1‐fold), the increase was largely due to its accumulation in seed coat and embryo tissues, with little enhancement observed in the endosperm. However, seed yield was affected in some vitamin B₆‐enhanced lines. Notably, expression of the transgenes did not affect the expression of the endogenous rice PDX genes. Intriguingly, despite transgene expression in leaves and seeds, the corresponding proteins were only detectable in leaves and could not be observed in seeds, possibly pointing to a mode of regulation in this organ.     

Maltotriose metabolism by Saccharomyces cerevisiae

Saccharomyces cerevisiae grew slower but reached higher cellular densities when grown on 20 g maltotriose l^–1 than on the same concentration of glucose or maltose. Antimycin A (3 mg l^–1) prevented growth on maltotriose, but not on glucose or maltose, indicating that it is not fermented but is degraded aerobically. This was confirmed by the absence of ethanol and glycerol production. Active uptake of maltotriose across the plasma membrane is the limiting step for metabolism, and the low rate of maltotriose transport observed in maltotriose-grown cells is probably one of the main reasons for the absence of maltotriose fermentation by S. cerevisiae cells.     

Whole chromosome aneuploidy: Big mutations drive adaptation by phenotypic leap

Despite its widespread existence, the adaptive role of aneuploidy (the abnormal state of having an unequal number of different chromosomes) has been a subject of debate. Cellular aneuploidy has been associated with enhanced resistance to stress, whereas on the organismal level it is detrimental to multicellular species. Certain aneuploid karyotypes are deleterious for specific environments, but karyotype diversity in a population potentiates adaptive evolution. To reconcile these paradoxical observations, this review distinguishes the role of aneuploidy in cellular versus organismal evolution. Further, it proposes a population genetics perspective to examine the behavior of aneuploidy on a populational versus individual level. By altering the copy number of a significant portion of the genome, aneuploidy introduces large phenotypic leaps that enable small cell populations to explore a wide phenotypic landscape, from which adaptive traits can be selected. The production of chromosome number variation can be further increased by stress- or mutation-induced chromosomal instability, fueling rapid cellular adaptation.     

Selective Cytotoxicity of Amidinopiperidine Based Compounds Towards Burkitt's Lymphoma Cells Involves Proteasome Inhibition

Serine proteases have proven to be promising pharmacological targets in contemporary drug discovery for cancer treatment. Since azaphenylalanine-based compounds manifest cytotoxic activity, we have selected serine protease inhibitors designed and synthesized in-house with large hydrophobic naphthalene moiety for screening. The cytotoxic potential of screened molecules was correlated to modifications of R(1) residues. The most cytotoxic were compounds with greater basicity; amidinopiperidines, piperidines and benzamidines. Amidinopiperidine-based compounds exert cytotoxicity in low μM range, with IC(50) 18 μM and 22 μM for inhibitors 15 and 16 respectively. These compounds exhibited selective cytotoxicity towards the Burkitt's lymphoma cells Ramos and Daudi, and proved nontoxic to PMBC, Jurkat and U937. They induce caspase-dependent apoptotic cell death, as demonstrated by the use of a pan-caspase inihibitor, zVADfmk, which was able to rescue Ramos cells from compound(s)-induced apoptosis. We confirm a disruption of the pro-survival pathway in Burkitt's lymphoma through NFκB inhibition. The accumulation of phosphorylated precursor (p105) and inhibitory (IκB) molecules with no subsequent release of active NFκB implicated the involvement of proteasome. Indeed, we show that the amidinopiperidine-based compounds inhibit all three proteolytical activities of the human 20S proteasome, with the most prominent effect being on the trypsin-like activity. Consistently, treatment of Ramos cells with these compounds led to an increase in ubiquitinated proteins. The amidinopiperidine-based serine protease inhibitors presented are, as selective inducers of apoptosis in Burkitt's lymphoma cells, promising leads for the development of novel chemotherapeutics.     

Proteins within the seminal fluid are crucial to keep sperm viable in the honeybee Apis mellifera

Seminal fluid is a biochemically complex mixture of glandular secretions that is transferred to the females sexual tract as part of the ejaculate. Seminal fluid has received increasing scientific interest in the fields of evolutionary and reproductive biology, as it seems a major determinant of male fertility/infertility and reproductive success. Here we used the honeybee Apis mellifera, where seminal fluid can be collected as part of a male's ejaculate, and performed a series of experiments to investigate the effects of seminal fluid and its components on sperm viability. We show that honeybee seminal fluid is highly potent in keeping sperm alive and this positive effect is present over a 24 h time span, comparable to the timing of the sperm storage process in the queen. We furthermore show that the presence of proteins within the seminal fluid and their structural integrity are crucial for this effect. Finally, we activated sperm using fructose and provide evidence that the positive effect of seminal fluid proteins on sperm survival cannot be replicated using generic protein substitutes. Our data provide experimental insights into the complex molecular interplay between sperm and seminal fluid defining male fertility and reproductive success.     

Tuning magnetic exchange using the versatile azide ligand

The ability of the azido ligand to generate various chemical architectures and magnetic couplings is surveyed, using Cu(II) and Ni(II) derivatives. Depending on the ratio between the azide salt, the metal salt and the tridentate Schiff base LH (L^?:1,1,1-trifluoro-7-(dimethylamino)-4-methyl-5-aza-3-hepten-2-onato), molecular bimetallic [CuL(μ_1,3-N₃)]₂ (1) and monometallic [NiL(μ₁-N₃)] (2) as well as extended {[CuL(μ_1,1-N₃)]}_n (3) and {[Ni₂(μ_1,1-N₃)(μ_1,3-N₃)(L)₂(MeOH)₂]}_n (4) chains were obtained. These systems were fully characterized by X-ray diffraction and magnetic susceptibility measurements. In 1, the asymmetrical double μ_1,3-N₃ bridge mediates a ferromagnetic exchange whereas 3 and 4 exhibit unusual symmetric and asymmetric single μ_1,1-N₃ coordination modes that transmit weak ferromagnetic interactions. Ab initio calculations were systematically performed to clarify the origin of the observed magnetic exchanges and to study the role of the asymmetric coordination modes on the magnetic coupling.