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121.
VSTx1 is a tarantula venom toxin which binds to the archaebacterial voltage-gated potassium channel KvAP. VSTx1 is thought to access the voltage sensor domain of the channel via the lipid bilayer phase. In order to understand its mode of action and implications for the mechanism of channel activation, it is important to characterize the interactions of VSTx1 with lipid bilayers. Molecular dynamics (MD) simulations (for a total simulation time in excess of 0.2 micros) have been used to explore VSTx1 localization and interactions with zwitterionic (POPC) and with anionic (POPE/POPG) lipid bilayers. In particular, three series of MD simulations have been used to explore the net drift of VSTx1 relative to the center of a bilayer, starting from different locations of the toxin. The preferred location of the toxin is at the membrane/water interface. Although there are differences between POPC and POPE/POPG bilayers, in both cases the toxin forms favorable interactions at the interface, maximizing H-bonding to lipid headgroups and to water molecules while retaining interactions with the hydrophobic core of the bilayer. A 30 ns unrestrained simulation reveals dynamic partitioning of VSTx1 into the interface of a POPC bilayer. The preferential location of VSTx1 at the interface is discussed in the context of Kv channel gating models and provides support for a mode of action in which the toxin interacts with the Kv voltage sensor "paddle" formed by the S3 and S4 helices. 相似文献
122.
Hoeks FW Boon LA Studer F Wolff MO van der Schot F Vrabél P van der Lans RG Bujalski W Manelius A Blomsten G Hjorth S Prada G Luyben KCh Nienow AW 《Journal of industrial microbiology & biotechnology》2003,30(2):118-128
Foam disruption by agitation—the stirring as foam disruption (SAFD) technique—was scaled up to pilot and production scale
using Rushton turbines and an up-pumping hydrofoil impeller, the Scaba 3SHP1. The dominating mechanism behind SAFD—foam entrainment—was
also demonstrated at production scale. The mechanistic model for SAFD defines a fictitious liquid velocity generated by the
(upper) impeller near the dispersion surface, which is correlated with complete foam disruption. This model proved to be scalable,
thus enabling the model to be used for the design of SAFD applications. Axial upward pumping impellers appeared to be more
effective with respect to SAFD than Rushton turbines, as demonstrated by retrofitting a 12,000 l bioreactor, i.e. the triple
Rushton configuration was compared with a mixed impeller configuration from Scaba with a 20% lower ungassed power draw. The
retrofitted impeller configuration allowed 10% more broth without risking excessive foaming. In this way a substantial increase
in the volumetric productivity of the bioreactor was achieved. Design recommendations for the application of SAFD are given
in this paper. Using these recommendations for the design of a 30,000 l scale bioreactor, almost foamless Escherichia coli fermentations were realised.
Electronic Publication 相似文献
123.
Nutrient uptake relationship to root characteristics of rice 总被引:1,自引:0,他引:1
Data on root parameters and distribution are important for an improved understanding of the factors influencing nutrient uptake
by a crop. Therefore, a study was conducted on a Crowley silt loam at the Rice Research and Extension Center near Stuttgart,
Arkansas to measure root growth and N, P and K uptake by three rice (Oryza sativa L.) cultivars at active tillering (36 days after emergence (DAE)), maximum tillering (41 DAE), 1.25 cm internode elongation
(55 DAE), booting (77 DAE) and heading (88 DAE). Soil-root core samples were taken to a depth of 40 cm after plant samples
were removed, sectioned into 5 cm intervals, roots were washed from soil and root lengths, dry weights and radii were measured.
Root parameters were significantly affected by the soil depth × growth stage interaction. In addition, only root radius was
affected by cultivar. At the 0- to 5-cm soil depth, root length density ranged from 38 to 93 cm cm-3 throughout the growing season and decreased with depth to about 2 cm cm-3 in the 35- to 40-cm depth increment. The increase in root length measured with each succeeding growth stage in each soil
horizon also resulted in increased root surface area, hence providing more exposed area for nutrient uptake. About 90% of
the total root length was found in the 0- to 20-cm soil depth throughout the season. Average root radius measured in the 0-
to 5-cm and 35- to 40-cm depth increments ranged from 0.012 to 0.013 cm and 0.004 to 0.005 cm, respectively throughout the
season. Total nutrient uptake by rice differed among cultivars only during vegetative growth. Differences in total nutrient
uptake among the cultivars in the field appear to be related to absorption kinetics of the cultivars measured in a growth
chamber study.
Published with permission of the Arkansas Agricultural Experiment Station. 相似文献
124.
Alfred R Radford J Fan J Boon K Krawetz R Rancourt D Kallos MS 《Biotechnology progress》2011,27(3):811-823
Large numbers of cells will be required for successful embryonic stem cell (ESC)-based cellular therapies or drug discovery, thus raising the need to develop scaled-up bioprocesses for production of ESCs and their derived progeny. Traditionally, ESCs have been propagated in adherent cultures in static flasks on fibroblasts layers in serum-containing medium. Direct translation of two-dimensional flatbed cultures to large-scale production of the quantities of cells required for therapy simply by increasing the number of dishes or flasks is not practical or economical. Here, we describe successful scaled-up production of ESCs on microcarriers in a stirred culture system in a serum-free medium. Cells expanded on CultiSpher S, Cytodex 3, and Collagen microcarriers showed superior cell-fold expansions of 439, 193, and 68, respectively, without excessive agglomeration, compared with 27 in static culture. In addition, the ESCs maintained their pluripotency after long-term culture (28 days) in serum-free medium. This is the first time mESCs have been cultured on microcarriers without prior exposure to serum and/or fibroblasts, while also eliminating the excessive agglomeration plaguing earlier studies. These protocols provide an economical, practical, serum-free means for expanding ESCs in a stirred suspension bioprocess. 相似文献
125.
Oxygen starvation triggers the shiftdown of the obligate aerobe Mycobacterium bovis BCG to a state of dormancy. Two-dimensional electrophoresis showed a drastic up-regulation of the alpha-crystallin homolog, the putative response regulator Rv3133c, and the two conserved hypothetical proteins Rv2623 and Rv2626c in dormant bacilli. 相似文献
126.
A negative mode liquid chromatography-selected reaction monitoring mass spectrometry (LC-SRM MS) method was developed to detect low concentrations of the diarrhetic shellfish poisoning (DSP) toxins okadaic acid and dinophysistoxin-1 (DTX-1). Detection relies upon monitoring the transition of negative precursor ions [M - H]- to a common fragment ion of m/z 255. Our limit of detection for okadaic acid with this method is 0.5 pg on column. LC-SRM MS has allowed us to detect persistent, low concentrations of DSP toxins from Singapore shellfish. 相似文献
127.
128.
129.
Kim SH Lee DG Yoo JH Choi SM Choi JH Shin WS Lee K Yong D Lee WG Youn BS Kang MW 《Journal of microbiology (Seoul, Korea)》2004,42(2):143-146
Vancomycin-resistant Enterococcus faecium (VREFM) is becoming a threatening pathogen. We identified a gene called DD1.5K by differential display-PCR, which was preferentially expressed in the bloodstream isolates of VREFM. Due to its amino acid similarity to transfer complex protein, trsE, and tissue-specific expression, this gene may be involved in virulence of VREFM. 相似文献
130.
Jin-Ha?Lee Mi-Hwa?Choi Ji-Young?Park Hee-Kyoung?Kang Hwa-Won?Ryu Chang-Sin?Sunwo Young-Jung?Wee Ki-Deok?Park Do-Won?Kim Doman?KimEmail author 《Biotechnology and Bioprocess Engineering》2004,9(4):318-322
Lactic acid is an environmentally benign organic acid that could be used as a raw material for biodegradable plastics if it
can be inexpensively produced by fermentation. Two genes (IdhL andIdhD) encoding the L-(+) and D-(−) lactate dehydrogenases (L-LDH and D-LDH) were cloned fromLactobacillus sp., RKY2, which is a lactic acid hyper-producing bacterium isolated from Kimchi. Open reading frames ofIdhL for andIdhD for the L and D-LDH genes were 962 and 998 bp, respectively. Both the L(+)- and D(−)-LDH proteins showed the highest degree
of homology with the L- and D-lactate dehydrogenase genes ofLactobacillus plantarum. The conserved residues in the catalytic activity and substrate binding of both LDHs were identified in both enzymes. 相似文献