Do spatial patterns of clonal fragments and architectural responses to defoliation depend on the structural blue-print? An experimental test with two rhizomatous Cyperaceae

Clonal architecture is involved in performance of clonal fragments, as it determines spatial distribution of ramets. It is expected to rely on the species-specific expression of several architectural traits (structural blue-print). However, in contrasting environments, realized clonal architectures may differ, due to phenotypic plasticity. In this paper, we compared clonal architectures between two rhizomatous ecologically close Cyperaceae (Carex divisa and Eleocharis palustris) in non-defoliated and defoliated conditions. Two questions were addressed. (1) How much do the structural blue-print and resulting colonization and occupation of space differ between both species? (2) Does the structural blue-print constrain plastic responses of clonal architecture to defoliation? Traits related to performance, spatial pattern, architecture and biomass allocation of clonal fragments were monitored through an original non-destructive mapping method. In non-defoliated conditions, both species showed similar biomass but contrasting architectures and patterns of biomass allocation to rhizomes that resulted in different spatial patterns. The rhizome network of C. divisa, which consisted in only two primary rhizomes but several branches, was involved in resource storage rather than in spatial colonization. Conversely, E. palustris produced on average six primary rhizomes that grew in the whole horizontal plane, maximizing both occupation and colonization of space. These differences in structural constraints coupled with allometric relationships, resulted in differential responses to defoliation. In C. divisa, the costs associated to defoliation caused a decrease in branching, limiting the area occupied and number of ramets produced by clonal fragments, but increasing ramet density. Conversely, the weakly branched rhizome network of E. palustris was not affected by defoliation. Both spatial strategies (consolidation vs. colonization) are likely to provide ecological advantages allowing their coexistence in grazed meadows.     

Protein isoaspartate methyltransferase prevents apoptosis induced by oxidative stress in endothelial cells: role of Bcl-Xl deamidation and methylation

Background

Natural proteins undergo in vivo spontaneous post-biosynthetic deamidation of specific asparagine residues with isoaspartyl formation. Deamidated-isomerized molecules are both structurally and functionally altered. The enzyme isoaspartyl protein carboxyl-O-methyltransferase (PCMT; EC 2.1.1.77) has peculiar substrate specificity towards these deamidated proteins. It catalyzes methyl esterification of the free α-carboxyl group at the isoaspartyl site, thus initiating the repair of these abnormal proteins through the conversion of the isopeptide bond into a normal α-peptide bond. Deamidation occurs slowly during cellular and molecular aging, being accelerated by physical-chemical stresses brought to the living cells. Previous evidence supports a role of protein deamidation in the acquisition of susceptibility to apoptosis. Aim of this work was to shed a light on the role of PCMT in apoptosis clarifying the relevant mechanism(s).

Methodology/Principal Findings

Endothelial cells transiently transfected with various constructs of PCMT, i.e. overexpressing wild type PCMT or negative dominants, were used to investigate the role of protein methylation during apoptosis induced by oxidative stress (H₂O₂; 0.1–0.5 mM range). Results show that A) Cells overexpressing “wild type” human PCMT were resistant to apoptosis, whereas overexpression of antisense PCMT induces high sensitivity to apoptosis even at low H₂O₂ concentrations. B) PCMT protective effect is specifically due to its methyltransferase activity rather than to any other non-enzymatic interactions. In fact negative dominants, overexpressing PCMT mutants devoid of catalytic activity do not prevent apoptosis. C) Cells transfected with antisense PCMT, or overexpressing a PCMT mutant, accumulate isoaspartyl-containing damaged proteins upon H₂O₂ treatment. Proteomics allowed the identification of proteins, which are both PCMT substrates and apoptosis effectors, whose deamidation occurs under oxidative stress conditions leading to programmed cell death. These proteins, including Hsp70, Hsp90, actin, and Bcl-xL, are recognized and methylated by PCMT, according to the general repair mechanism of this methyltransferase.

Conclusion/Significance

Apoptosis can be modulated by “on/off” switch partitioning the amount of specific protein effectors, which are either in their active (native) or inactive (deamidated) molecular forms. Deamidated proteins can also be functionally restored through methylation. Bcl-xL provides a case for the role of PCMT in the maintenance of functional stability of this antiapoptotic protein.     

After grazing exclusion,is there any modification of strategy for two guerrilla species: <Emphasis Type="Italic">Elymus repens</Emphasis> (L.) Gould and <Emphasis Type="Italic">Agrostis stolonifera</Emphasis> (L.)?

Elymus repens (L.) Gould and Agrostis stolonifera (L.), are competitive grasses with guerrilla strategy that invade grasslands with a low stocking rate. In this work, we tested the hypotheses that grazing exclusion facilitates vegetative development of rhizomes and stolons of these clonal grasses and that such change is a key mechanism for their abundance in set-aside grasslands. The competitive capacities of these two guerrilla species were characterised by samples in plant community (species richness and biomass) and on the level of individual species (morphometric measurements on stolons and rhizomes) during a growing season. Compared to grasslands where grazing was excluded for three years, species richness was higher in grazed site and the plant community structure differed. Indeed, with grazing exclusion, a shift from annual species with a diversified growth-form to perennial species with a tall tussock and graminoid growth-form was monitored. In ungrazed situation, Elymus repens and Agrostis stolonifera were the dominant grasses, and the standing biomass for the lowland community showed a significant increase compared to the grazed site. Vegetative development increased competitive capacities of these two guerrilla species and led by phenomenon of competitive exclusion to the disappearance of annuals species. With grazing cessation, Elymus repens was found to increase the size of aerial traits (shoot length and the number of leaves per shoot) and this may both be propitious for achieving dominance within plant communities and also maintaining its competitive local advantage. By contrast, Agrostis stolonifera showed an increase in a root trait, i.e. rhizome length, in the fenced site, which provide good ability for spatial propagation and then to explore adjacent patches. We concluded that Elymus repens presented a morphological capacity to change its colonising strategy from a guerrilla strategy to a phalanx strategy, by morphological variability of aerial organs, when it was submitted to competitive stress and environment modifications. Agrostis stolonifera showed a capacity to escape aerial competition resulting from grazing cessation, than to increase underground propagation capacity. The present study highlighted the capacities of Elymus repens to respond in an adaptative way to competitive pressure.     

An examination of dental development in Graecopithecus freybergi (=Ouranopithecus macedoniensis)

This study examined enamel thickness and dental development in Graecopithecus freybergi (=Ouranopithecus macedoniensis), a late Miocene hominoid from Greece. Comparative emphasis was placed on Proconsul, Afropithecus, Dryopithecus, Lufengpithecus, and Gigantopithecus, fossil apes that vary in enamel thickness and patterns of development. In addition, comparisons were made with Paranthropus to investigate reported similarities in enamel thickness. Several sections of a right lower third molar were generated, from which enamel thickness and aspects of the enamel and dentine microstructure were determined. Data from parallel sections shed light on the effects of section obliquity, which may influence determination of both enamel thickness and crown formation time. Graecopithecus has relatively thick enamel, greater than any fossil ape but less than Paranthropus, with which it does show similarity in prism path and Hunter-Schreger band morphology. Aspects of enamel microstructure, including the periodicity and daily secretion rate, are similar to most extant and fossil apes, especially Afropithecus. Total crown formation time was estimated to be 3.5 years, which is greater than published values for modern Homo, similar to Pan, and less than Gigantopithecus. Data on dentine secretion and extension rates suggest that coronal dentine formation was relatively slow, but comparative data are very limited. Graecopithecus shares a crown formation pattern with several thick-enamelled hominoids, in which cuspal enamel makes up a very large portion of crown area, is formed by a large cell cohort, and is formed in less than half of the total time of formation. In Paranthropus, this pattern appears to be even more extreme, which may result in thicker enamel formed in an even shorter time. Developmental similarities between Paranthropus and Graecopithecus are interpreted to be parallelisms due to similarities in the mechanical demands of their diets.     

Stable isotope ecology of Miocene bovids from northern Greece and the ape/monkey turnover in the Balkans

Eurasia was home to a great radiation of hominoid primates during the Miocene. All were extinct by the end of the Miocene in Western Eurasia. Here, we investigate the hypothesis of climate and vegetation changes at a local scale when the cercopithecoid Mesopithecus replaced the hominoid Ouranopithecus along the Axios River, Greece. Because they are herbivorous and were much more abundant than primates, bovids are preferred to primates to study climate change in the Balkans as a cause of hominoid extinction. By measuring carbon stable isotope ratios of bovid enamel, we conclude that Ouranopithecus and Mesopithecus both evolved in pure C₃ environments. However, the large range of δ¹³C values of apatite carbonate from bovids combined with their molar microwear and mesowear patterns preclude the presence of dense forested landscapes in northern Greece. Instead, these bovids evolved in rather open landscapes with abundant grasses in the herbaceous layer. Coldest monthly estimated temperatures were below 10 °C and warmest monthly temperatures rose close to or above 20 °C for the two time intervals. Oxygen isotope compositions of phosphate from bulk samples did not show significant differences between sites but did show between-species variation within each site. Different factors influence oxygen isotope composition in this context, including water provenience, feeding ecology, body mass, and rate of amelogenesis. We discuss this latter factor in regard to the high intra-tooth variations in δ¹⁸O_p reflecting important amplitudes of seasonal variations in temperature. These estimations fit with paleobotanical data and differ slightly from estimations based on climate models. This study found no significant change in climate before and after the extinction of Ouranopithecus along the Axios River. However, strong seasonal variations with relatively cold winters were indicated, conditions quite usual for extant monkeys but unusual for great apes distributed today in inter-tropical regions.     

Crosstalk between Helicobacter pylori and Gastric Epithelial Cells Is Impaired by Docosahexaenoic Acid

H. pylori colonizes half of the world''s population leading to gastritis, ulcers and gastric cancer. H. pylori strains resistant to antibiotics are increasing which raises the need for alternative therapeutic approaches. Docosahexaenoic acid (DHA) has been shown to decrease H. pylori growth and its associated-inflammation through mechanisms poorly characterized. We aimed to explore DHA action on H. pylori-mediated inflammation and adhesion to gastric epithelial cells (AGS) and also to identify bacterial structures affected by DHA. H. pylori growth and metabolism was assessed in liquid cultures. Bacterial adhesion to AGS cells was visualized by transmission electron microscopy and quantified by an Enzyme Linked Immunosorbent Assay. Inflammatory proteins were assessed by immunoblotting in infected AGS cells, previously treated with DHA. Bacterial total and outer membrane protein composition was analyzed by 2-dimensional gel electrophoresis. Concentrations of 100 µM of DHA decreased H. pylori growth, whereas concentrations higher than 250 µM irreversibly inhibited bacteria survival. DHA reduced ATP production and adhesion to AGS cells. AGS cells infected with DHA pre-treated H. pylori showed a 3-fold reduction in Interleukin-8 (IL-8) production and a decrease of COX2 and iNOS. 2D electrophoresis analysis revealed that DHA changed the expression of H. pylori outer membrane proteins associated with stress response and metabolism and modified bacterial lipopolysaccharide phenotype. As conclusions our results show that DHA anti-H. pylori effects are associated with changes of bacteria morphology and metabolism, and with alteration of outer membrane proteins composition, that ultimately reduce the adhesion of bacteria and the burden of H. pylori-related inflammation.     

Plant colonization and survival along a hydrological gradient: demography and niche dynamics

Predicting the effect of a changing environment, e.g., caused by climate change, on realized niche dynamics, and consequently, biodiversity is a challenging scientific question that needs to be addressed. One promising approach is to use estimated demographic parameters for predicting plant abundance and occurrence probabilities. Using longitudinal pinpoint cover data sampled along a hydrological gradient in the Marais poitevin grasslands, France, the effect of the gradient on the demographic probabilities of colonization and survival was estimated. The estimated probabilities and calculated elasticities of survival and colonization covaried with the observed cover of the different species along the hydrological gradient. For example, the flooding tolerant grass A. stolonifera showed a positive response in both colonization and survival to flooding, and the hydrological gradient is clearly the most likely explanation for the occurrence pattern observed for A. stolonifera. The results suggest that knowledge on the processes of colonization and survival of the individual species along the hydrological gradient is sufficient for at least a qualitative understanding of species occurrences along the gradient. The results support the hypothesis that colonization has a predominant role for determining the ecological success along the hydrological gradient compared to survival. Importantly, the study suggests that it may be possible to predict the realized niche of different species from demographic studies. This is encouraging for the important endeavor of predicting realized niche dynamics.     

Wave speed in noncircular collapsible ducts

The wave speed in initially elliptical collapsible tubes was studied. The celerity c of pressure waves of small amplitude was calculated from the numerically defined area-pressure law of the buckled cross section. In addition to the fact that the wave speed variation with transmural pressure was strongly dependent upon the initial eccentricity of the cross section, the wave speed value was found to be discontinuous at the contact pressure pc and reached a minimum on the right-hand side of the discontinuity. These results were compared with experimental data obtained in an annular duct.     

Water salinity effects on embryogenesis of the lesser sandeel,Ammodytes tobianus (Linnaeus, 1758)

Effects of water salinity (3.0–9.0 PSU) on the duration and outcome of embryogenesis in the lesser sandeel (Ammodytes tobianus (L.) as well as on survival, size, and malformation rate of the newly hatched larvae were followed, based on observations involving equipment consisting of a microscope and still and digital cameras. The images obtained and measurements of egg and larval dimensions were analyzed using the NIS elements Br. computer software package. The lowest salinity tested (3.0 PSU), similar to that in the inshore Baltic Sea waters native for the species studied, produced a lower fertilization rate and resulted in extended embryogenesis, reduced embryo survival, changes in the hatch size, and increased larval malformation rate. The high-end salinity (7.5–9.0 PSU), higher than that prevailing in the species’s spawning grounds in the Baltic Sea, resulted — similarly to the low-end salinity — in disturbed development and growth of the embryos.