Mechanism of activation of the RAF-ERK signaling pathway by oncogenic mutations of B-RAF

Over 30 mutations of the B-RAF gene associated with human cancers have been identified, the majority of which are located within the kinase domain. Here we show that of 22 B-RAF mutants analyzed, 18 have elevated kinase activity and signal to ERK in vivo. Surprisingly, three mutants have reduced kinase activity towards MEK in vitro but, by activating C-RAF in vivo, signal to ERK in cells. The structures of wild type and oncogenic V599EB-RAF kinase domains in complex with the RAF inhibitor BAY43-9006 show that the activation segment is held in an inactive conformation by association with the P loop. The clustering of most mutations to these two regions suggests that disruption of this interaction converts B-RAF into its active conformation. The high activity mutants signal to ERK by directly phosphorylating MEK, whereas the impaired activity mutants stimulate MEK by activating endogenous C-RAF, possibly via an allosteric or transphosphorylation mechanism.     

Bacterial Diversity and Sulfur Cycling in a Mesophilic Sulfide-Rich Spring

An artesian sulfide- and sulfur-rich spring in southwestern Oklahoma is shown to sustain an extremely rich and diverse microbial community. Laboratory incubations and autoradiography studies indicated that active sulfur cycling is occurring in the abundant microbial mats at Zodletone spring. Anoxygenic phototrophic bacteria oxidize sulfide to sulfate, which is reduced by sulfate-reducing bacterial populations. The microbial community at Zodletone spring was analyzed by cloning and sequencing 16S rRNA genes. A large fraction (83%) of the microbial mat clones belong to sulfur- and sulfate-reducing lineages within δ-Proteobacteria, purple sulfur γ-Proteobacteria, -Proteobacteria, Chloroflexi, and filamentous Cyanobacteria of the order Oscillatoria as well as a novel group within γ-Proteobacteria. The 16S clone library constructed from hydrocarbon-exposed sediments at the source of the spring had a higher diversity than the mat clone library (Shannon-Weiner index of 3.84 compared to 2.95 for the mat), with a higher percentage of clones belonging to nonphototrophic lineages (e.g., Cytophaga, Spirochaetes, Planctomycetes, Firmicutes, and Verrucomicrobiae). Many of these clones were closely related to clones retrieved from hydrocarbon-contaminated environments and anaerobic hydrocarbon-degrading enrichments. In addition, 18 of the source clones did not cluster with any of the previously described microbial divisions. These 18 clones, together with previously published or database-deposited related sequences retrieved from a wide variety of environments, could be clustered into at least four novel candidate divisions. The sulfate-reducing community at Zodletone spring was characterized by cloning and sequencing a 1.9-kb fragment of the dissimilatory sulfite reductase (DSR) gene. DSR clones belonged to the Desulfococcus-Desulfosarcina-Desulfonema group, Desulfobacter group, and Desulfovibrio group as well as to a deeply branched group in the DSR tree with no representatives from cultures. Overall, this work expands the division-level diversity of the bacterial domain and highlights the complexity of microbial communities involved in sulfur cycling in mesophilic microbial mats.     

Calcium mobilization evoked by hepatocellular swelling is linked to activation of phospholipase Cgamma

Recovery from swelling of hepatocytes and selected other epithelia is triggered by intracellular Ca(2+) release from the endoplasmic reticulum, which leads to fluid and electrolyte efflux through volume-sensitive K(+) and Cl(-) channels. The aim of this study was to determine the mechanisms responsible for swelling-mediated hepatocellular Ca(2+) mobilization. Swelling of HTC rat hepatoma cells, evoked by exposure to hypotonic medium, elicited transient increases in intracellular levels of inositol 1,4,5-trisphosphate (IP(3)) and cytosolic [Ca(2+)]. The latter was attenuated by inhibition of phospholipase C (PLC) with and by IP(3) receptor blockade with 2-aminoethoxydiphenyl borate, but it was unaffected by ryanodine, an inhibitor of intracellular Ca(2+)-induced Ca(2+) release channels. Hypotonic swelling was associated with a transient increase in tyrosine phosphorylation of PLCgamma, with kinetics that paralleled the increases in intracellular IP(3) levels and cytosolic [Ca(2+)]. Confocal imaging of HTC cells exposed to hypotonic medium revealed a swelling-induced association of tyrosine-phosphorylated PLCgamma with the plasma membrane. These findings suggest that activation of PLCgamma by hepatocellular swelling leads to the generation of IP(3) and stimulates discharge of Ca(2+) from the endoplasmic reticulum via activation of IP(3) receptors. By extension, these data support the concept that tyrosine phosphorylation of PLCgamma represents a critical step in adaptive responses to hepatocellular swelling.     

Familial amyotrophic lateral sclerosis-associated mutations decrease the thermal stability of distinctly metallated species of human copper/zinc superoxide dismutase

We report the thermal stability of wild type (WT) and 14 different variants of human copper/zinc superoxide dismutase (SOD1) associated with familial amyotrophic lateral sclerosis (FALS). Multiple endothermic unfolding transitions were observed by differential scanning calorimetry for partially metallated SOD1 enzymes isolated from a baculovirus system. We correlated the metal ion contents of SOD1 variants with the occurrence of distinct melting transitions. Altered thermal stability upon reduction of copper with dithionite identified transitions resulting from the unfolding of copper-containing SOD1 species. We demonstrated that copper or zinc binding to a subset of "WT-like" FALS mutants (A4V, L38V, G41S, G72S, D76Y, D90A, G93A, and E133Delta) conferred a similar degree of incremental stabilization as did metal ion binding to WT SOD1. However, these mutants were all destabilized by approximately 1-6 degrees C compared with the corresponding WT SOD1 species. Most of the "metal binding region" FALS mutants (H46R, G85R, D124V, D125H, and S134N) exhibited transitions that probably resulted from unfolding of metal-free species at approximately 4-12 degrees C below the observed melting of the least stable WT species. We conclude that decreased conformational stability shared by all of these mutant SOD1s may contribute to SOD1 toxicity in FALS.     

Pyruvate metabolism during maturation of hamlin oranges

The roles of the pyruvate decarboxylation pathway and TCA metabolic cycle in activation of anaerobic metabolism in ripening Hamlin oranges were investigated. Oranges were harvested weekly from October to February during the 1980–81 and 1981–82 growing season. Juice vesicles from each weekly sample were assayed for pyruvate decarboxylase, alcohol dehydrogenase, malic enzyme, phosphoenolpyruvate carboxylase, malate dehydrogenase, citrate synthase, isocitrate dehydrogenase and cytochrome oxidase. Also, juice was assayed for ethanol, acetaldehyde, pyruvate, oxalacetate, malate and citrate. In December when ethanol accumulated rapidly in the fruit, pyruvate decarboxylase and alcohol dehydrogenase increased markedly. During the same month, the pyruvate level declined, suggesting that the increases in enzyme levels activated the conversion of pyruvate to ethanol.     

Two different glycosyltransferase defects that result in GalNAc{alpha}-O-peptide (Tn) expression

This study shows for the first time that different glycosyltransferasedefects in the biosynthesis of O-linked oligosaccharides giverise to the same GalNAc-O-Ser/Thr determinant on Tn erythrocytesand colorectal carcinoma cells. The O-linked oligosaccharidesisolated from the glycophorins of Tn erythrocytes containedpredominantly -Nacetylgalactosamine-O-Ser/Thr (Tn antigen) andsialyl-Tn. A marked reduction in normal sialylated oligosaccharideswas also observed. Monoclonal antibody BRIC 111 raised againstTn erythrocytes reacted with both Tn erythrocytes and colorectalcarcinoma tissues. Weak staining was detected in the supranucleararea and at the surface membranes in normal colorectal cells,but was absent from goblet cell vesicles. An increase in supranuclearstaining over controls was found in tumour tissue and in themajority of resection margin specimens. The highest levels ofstaining were present in transitional mucosa, adjacent to thetumours where goblet vesicles were also positive. Glycosylationdefects in the same patients were further studied by determinationof the activity of glycosyltransferases in mucosal tissue fromcontrol and cancer patients. The reduction in or loss of ß1-3 N-acetylglucosaminyl transferase activity to GalNAc-peptidein asialo-ovine submaxillary gland glycoprotein was detectedby direct assay and by isolation of the oligosaccharides fromthe incubation products. No differences in N-acetylglucosaminyl-,galactosyl- or sialyl-transfer to Galß1-3GaINAc inantifreeze glycoprotein or in sialyl transferase to asialo-ovinesubmaxillary gland glycoprotein were detected. Our study showsthat the GalNAc-O-Ser/Thr determinant on Tn erythrocytes andin colorectal carcinoma results from different glycosyltransferasedefects in separate biosynthetic pathways for haematopoieticand epithelial tissues. -N-Acetylgalactosamine-O-Ser Thr colon cancer erythrocyte O-glycosylation glycosyltransfer Tn