Improving the performance of the EPT Index to accommodate multiple stressors in Afrotropical streams

The EPT index (Ephemeroptera, Plecoptera and Trichoptera) may be skewed by the wide tolerance to multiple stressors of the Baetid, Caenid and Hydropsychid families, which affects the performance of the EPT index as an indicator of multiple stressors in aquatic ecosystems. The effect of the BCH families on the EPT index was evaluated and alternatives were considered to improve its performance. The hypothesis that the removal of the BCH families improves sensitivity of the EPT index to human-induced stressors in streams and rivers was tested. Macroinvertebrates were collected in January–March 2009 at 22 sites in the Nyando and Nzoia Rivers, Lake Victoria basin, Kenya. Nine derivatives and modifications of the EPT index were tested for responses to a disturbance gradient, ranked into three condition categories (reference, intermediate and impaired). The sensitivity of the proportionate abundance derivative of the EPT index improved when the BCH families were removed, whereas that of the richness derivative improved marginally. Other modifications considered performed poorly when compared with the EPT-BCH metrics. Wide distribution of the BCH across all sites, irrespective of the level of disturbance, reduced the sensitivity of the EPT index in the studied streams. The removal of the BCH families enhanced the sensitivity of the index to multiple stressors in Afrotropical streams and rivers.     

Survey of Genomics Approaches to Improve Bioenergy Traits in Maize,Sorghum and Sugarcane

Bioenergy crops currently provide the only source of alternative energy with the potential to reduce the use of fossil transportation fuels in a way that is compatible with existing engine technology,including in developing countries.Even though bioenergy research is currently receiving considerable attention,many of the concepts are not new,but rather build on intense research efforts from 30 years ago.A major difference with that era is the availability of genomics tools that have the potential to acceler...     

Satellite RNA for the control of plant diseases caused by cucumber mosaic virus

Two virus-protecting strains, S₅₁ and S₅₂, were obtained for the control of cucumber mosaic virus (CMV) by local lesion selection after adding satellite RNA to the RNA genome of CMV. Both were found to protect pepper plants against a virulent strain of CMV under greenhouse and field conditions. Results from 14 localities in China indicated that the use of protective strains decreased the disease index by 21.6% to 82.8% and increased fruit yields by 10.8% to 55.6%. The host reactions and safety of S₅₁ and S₅₂ were tested, and the effects of the strains on plant growth were also investigated. Possible mechanisms of control of CMV-caused plant diseases by mild strains are discussed.     

A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data

Phylogeny reconstruction is a difficult computational problem, because the number of possible solutions increases with the number of included taxa. For example, for only 14 taxa, there are more than seven trillion possible unrooted phylogenetic trees. For this reason, phylogenetic inference methods commonly use clustering algorithms (e.g., the neighbor-joining method) or heuristic search strategies to minimize the amount of time spent evaluating nonoptimal trees. Even heuristic searches can be painfully slow, especially when computationally intensive optimality criteria such as maximum likelihood are used. I describe here a different approach to heuristic searching (using a genetic algorithm) that can tremendously reduce the time required for maximum-likelihood phylogenetic inference, especially for data sets involving large numbers of taxa. Genetic algorithms are simulations of natural selection in which individuals are encoded solutions to the problem of interest. Here, labeled phylogenetic trees are the individuals, and differential reproduction is effected by allowing the number of offspring produced by each individual to be proportional to that individual's rank likelihood score. Natural selection increases the average likelihood in the evolving population of phylogenetic trees, and the genetic algorithm is allowed to proceed until the likelihood of the best individual ceases to improve over time. An example is presented involving rbcL sequence data for 55 taxa of green plants. The genetic algorithm described here required only 6% of the computational effort required by a conventional heuristic search using tree bisection/reconnection (TBR) branch swapping to obtain the same maximum-likelihood topology.      

Medical care for Russian cosmonauts on board the ISS

Established with the personal participation of O.G. Gazenko, the Russian system of medical care for cosmonauts has been largely preserved to this day. The system was fully functional on board the orbital complex Mir and, with appropriate modifications, has been adopted as the core of the medical care for Russian members of ISS crews. In 2000–2008, 22 cosmonauts were members of 17 ISS missions lasting from 140 to 216 days. The main functions of the medical care system were to control health, physical, and mental performance, and to support space research. Readaptation to normal gravity was, in most cases, similar to what has been typical on the return from Russian orbital stations; some deviations are accounted for by the use of in-flight countermeasures. The paper presents some aspects of the theoretical work of Academician Gazenko in the field of medical care in space flights. It outlines the principles of ISS medical management. The integrated medical support system combines medical equipment and items available in the Russian and U.S. segments; the integrated medical group consists of flight surgeons, medical experts, and biomedical engineers of international partners and coordinates the planning and implementation of medical operations. In addition, challenges of health care in the phase of ISS operation are defined.     

Fundamental and applied aspects of preventing the adverse effects of aviation noise

Aviation noise is discussed as a harmful physical factor with ecological, hygienic, clinical, and social implications. Noise contributes to the development of general and occupational pathologies, chronic diseases, and reduction of professional longevity. The present-day knowledge of aviation noise sources and dynamics and effects on environment, population, and aviation personnel is overviewed, as well as strategies to prevent noise consequences including muffling techniques as the key ones.     

Plant resistance to fungal diseases induced by the infection of cucumber mosaic virus attenuated by satellite RNA

Biological control agents (BCAs) composed of attenuated cucumber mosaic (CMV) and its satellite RNA for controlling CMV diseases were found to induce plant resistance to a number of fungal diseases. Tests conducted in both the field and greenhouse showed evident protective effects against fungal infections by the BCAs. Artificial inoculation with a fungal spore suspension using BCA-treated plants, satellite transgenic plants and plants infected with CMV alone indicated that the resistance to fungi was induced by the virus infection, not by the presence of satellite RNA.     

Population genetic study of Russian cosmonauts and test subjects: Genetic demographic parameters and immunogenetic markers

Genetic demographic characteristics and immunogenetic markers (blood groups ABO, Rhesus, MNSs, P, Duffy, Kidd, and Kell) have been studied in a group of 132 Russian cosmonauts and test subjects (CTSG). Analysis of pedigrees has shown a high exogamy in the preceding generations: almost half of the subjects have mixed ethnic background. According to the results of genetic demographic analysis, a sample from the Moscow population was used as control group (CG). Comparison between the CTSG and CG has demonstrated significant differences in genotype frequencies for several blood group systems. The CTSG is characterized by a decreased proportion of rare interlocus genotypic combinations and an increased average heterozygosity. Analysis of the distributions of individual heterozygosity for loci with codominant expression of alleles has shown that the carriers of highly heterozygous genotypes are more frequent in the CTSG. Taking into account that the CTSG has been thoroughly selected from the general population, it is concluded that heterozygosity is related to successful adaptation to a space flight.