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21.
L. Zavalova S. Lukyanov I. Baskova E. Snezhkov S. Akopov S. Berezhnoy E. Bogdanova E. Barsova E. D. Sverdlov 《Molecular & general genetics : MGG》1996,253(1-2):20-25
We previously detected in salivary gland secretions of the medicinal leech (Hirudo medicinalis) a novel enzymatic activity, endo-ɛ(γ-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor
XIIIa) between glutamine γ-carboxamide and the ɛ-amino group of lysine. Such isopeptide bonds, either within or between protein
polypeptide chains are formed in many biological processes. However, before we started our work no enzymes were known to be
capable of specifically splitting isopeptide bonds in proteins. The isopeptidase activity we detected was specific for isopeptide
bonds. The enzyme was termed destabilase. Here we report the first purification of destabilase, part of its amino acid sequence,
isolation and sequencing of two related cDNAs derived from the gene family that encodes destabilase proteins, and the detection
of isopeptidase activity encoded by one of these cDNAs cloned in a baculovirus expression vector. The deduced mature protein
products of these cDNAs contain 115 and 116 amino acid residues, including 14 highly conserved Cys residues, and are formed
from precursors containing specific leader peptides. No homologous sequences were found in public databases.
Received: 9 April 1996 / Accepted: 17 May 1996 相似文献
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L. R. Bogdanova D. R. Bakirova Yu. A. Valiullina B. Z. Idiyatullin D. A. Faizullin O. S. Zueva Yu. F. Zuev 《Biophysics》2016,61(2):207-212
The changes in the structure and catalytic properties of fungal lipases (Candida rugosa, Rhizomucor miehei, Mucor javanicus) were investigated in micellar solutions of bile salts that differ in their hydrophilic–lypophilic balance and reaction medium properties. The methods of circular dichroism and tryptophan fluorescence were applied to estimate the changes in peptide structure within complexes with bile-salt micelles. Bile salts do not exert a significant influence on the structure of the enzymes under study: in the Rh. miehei and M. javanicus lipases the α-helix content was slightly decreased; an influence of the bile salts on the C. rugosa structure was not revealed. Despite negligible structural modifications in the enzymes, a considerable change in their catalytic properties, namely an abrupt decrease in catalytic effectiveness was observed in bile-salt solutions. Substrate–bile salt micelle complex formation was demonstrated by the NMR self-diffusion method. A model of the regulation of fungal lipase activity was proposed. 相似文献
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Platon Eliseev Grigory Balantcev Elena Nikishova Anastasia Gaida Elena Bogdanova Donald Enarson Tara Ornstein Anne Detjen Russell Dacombe Elena Gospodarevskaya Patrick P. J. Phillips Gillian Mann Stephen Bertel Squire Andrei Mariandyshev 《PloS one》2016,11(4)
BackgroundIn the Arkhangelsk region of Northern Russia, multidrug-resistant (MDR) tuberculosis (TB) rates in new cases are amongst the highest in the world. In 2014, MDR-TB rates reached 31.7% among new cases and 56.9% among retreatment cases. The development of new diagnostic tools allows for faster detection of both TB and MDR-TB and should lead to reduced transmission by earlier initiation of anti-TB therapy.MethodsA culture-based diagnostic algorithm used prior to LPA implementation was compared to an LPA-based algorithm that replaced BacTAlert and Löwenstein Jensen (LJ) for drug sensitivity testing. A total of 295 MDR-TB patients were included in the study, 163 diagnosed with the culture-based algorithm, 132 with the LPA-based algorithm.ResultsAmong smear positive patients, the implementation of the LPA-based algorithm was associated with a median decrease in time to MDR-TB treatment initiation of 50 and 66 days compared to the culture-based algorithm (BacTAlert and LJ respectively, p<0.001). In smear negative patients, the LPA-based algorithm was associated with a median decrease in time to MDR-TB treatment initiation of 78 days when compared to the culture-based algorithm (LJ, p<0.001). However, several weeks were still needed for treatment initiation in LPA-based algorithm, 24 days in smear positive, and 62 days in smear negative patients. Overall treatment outcomes were better in LPA-based algorithm compared to culture-based algorithm (p = 0.003). Treatment success rates at 20 months of treatment were higher in patients diagnosed with the LPA-based algorithm (65.2%) as compared to those diagnosed with the culture-based algorithm (44.8%). Mortality was also lower in the LPA-based algorithm group (7.6%) compared to the culture-based algorithm group (15.9%). There was no statistically significant difference in smear and culture conversion rates between the two algorithms.ConclusionThe results of the study suggest that the introduction of LPA leads to faster time to MDR diagnosis and earlier treatment initiation as well as better treatment outcomes for patients with MDR-TB. These findings also highlight the need for further improvements within the health system to reduce both patient and diagnostic delays to truly optimize the impact of new, rapid diagnostics. 相似文献
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Bogdanova Alexandra Sergeevna Sokolova Anastasiia Ivanovna Pavlova Elizaveta Robertovna Klinov Dmitry Vladimirovich Bagrov Dmitry Vladimirovich 《Journal of biological physics》2021,47(2):205-214
Journal of Biological Physics - The morphology and proliferation of eukaryotic cells depend on their microenvironment. When electrospun mats are used as tissue engineering scaffolds, the local... 相似文献
27.
E. A. Kondakova V. I. Efremov V. A. Bogdanova 《Russian Journal of Developmental Biology》2017,48(3):176-184
The yolk syncytial layer (YSL) is a symplastic provisory system that forms at the early stages of embryogenesis of teleosts. The YSL serves morphogenetic, trophic, and immune functions. Despite its important role in development, data on the structure of YSL is scarce. In the present study, comparative histological research on the features of YSL structure in the development of larvae of four economically important species of Coregonidae (Salmoniformes)—Coregonus peled, Coregonus muksun, Coregonus nasus, and Stenodus leucichthys nelma—is presented. The YSL of the larvae of Coregonidae has a complex, differentiated structure. Functional regionalization of YSL cytoplasm, possibly determined by the specific features of nutrient assimilation, is typical for all aforementioned species. Cytoplasm that encircles a large oil globule appears striated. A division into an inner area, filled with yolk inclusions, and an outer, smoother homogeneous area, can be noted in the cytoplasm surrounding the yolk mass. The oil globule is retained after complete utilization of the yolk mass. The inequality of thickness of YSL along anteroposterior and dorsoventral axes also indicates the functional regionalization. The dorsomedial area of YSL, located under the intestine, is the least thick. Dorsolateral areas are strongly incrassated and envelop the intestine from two sides. Gigantic nuclei of exceptionally complex form are typical for YSL. Specific features apply to the form of YSL and its nuclei. Based on the obtained results, a fundamental similarity in organization of the YSL of larvae of the studied whitefishes can be concluded; however, its specific variations distinguishable on a histological level can be discussed. 相似文献
28.
Halil brahim GÜLER Fulya AY AL Zehra CAN Yakup KARA Oktay YILDIZ Ali Osman BELDÜZ Sabriye ANAKI Sevgi KOLAYLI 《Turkish Journal of Biology》2021,45(4):530
Propolis is a multi-functional bee product rich in polyphenols. In this study, the inhibitory effect of Anatolian propolis against SARS-coronavirus-2 (SARS-CoV-2) was investigated in vitro and in silico. Raw and commercial propolis samples were used, and both samples were found to be rich in caffeic acid, p-coumaric acid, ferulic acid, t-cinnamic acid, hesperetin, chrysin, pinocembrin, and caffeic acid phenethyl ester (CAPE) at HPLC-UV analysis. Ethanolic propolis extracts (EPE) were used in the ELISA screening test against the spike S1 protein (SARS-CoV-2): ACE-2 interaction for in vitro study. The binding energy values of these polyphenols to the SARS-CoV-2 spike and ACE-2 protein were calculated separately with a molecular docking study using the AutoDock 4.2.6 program. In addition, the pharmacokinetics and drug-likeness properties of these eight polyphenols were calculated according to the SwissADME tool. The binding energy value of pinocembrin was highest in both receptors, followed by chrysin, CAPE, and hesperetin. Based on the in silico modeling and ADME (absorption, distribution, metabolism, and excretion) behaviors of the eight polyphenols, the compounds exhibited the potential ability to act effectively as novel drugs. The findings of both studies showed that propolis has a high inhibitory potential against the Covid-19 virus. However, further studies are now needed. 相似文献
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Krasilnikova E. N. Tsaplina I. A. Zakharchuk L. M. Bogdanova T. I. 《Applied Biochemistry and Microbiology》2001,37(4):358-362
Aerobic thermoacidophilic chemolithotrophic bacteria Sulfobacillus thermosulfidooxidans1269Tand Sulfobacillus thermosulfidooxidanssubsp. asporogenes41 were shown to be resistant to stress factors, including high concentrations of Zn2+(0.8 M) and supraoptimal concentrations of H+(pH 1.2). The growth and biomass gain rates decreased, but bacteria retained their functions. The activity of nearly all enzymes involved in carbon metabolism decreased. Glucose was primarily metabolized via the Entner–Doudoroff pathway. The activity of tricarboxylic acid cycle enzymes decreased compared to that in cells grown under normal conditions. After saturation of the growth medium with 5 vol % CO2, sulfobacteria utilized glucose by the Embden–Meyerhof and pentose phosphate pathways under mixotrophic conditions. 相似文献